Wall clock time and date at job start Sun Mar 29 2020 22:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35917 * 116.99522 * 180.02562 * 3 2 1 5 5 C 1.38748 * 120.47769 * 359.72104 * 4 3 2 6 6 N 1.31813 * 120.68304 * 179.68238 * 5 4 3 7 7 C 1.31880 * 121.77687 * 0.63220 * 6 5 4 8 8 C 1.38210 * 120.88760 * 359.66140 * 7 6 5 9 9 C 1.50706 * 120.38443 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46848 * 270.01718 * 9 8 7 11 11 C 1.50706 * 109.46848 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00017 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99892 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00072 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 120.00120 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46850 * 89.99776 * 15 13 11 17 17 H 1.48503 * 109.47571 * 209.99938 * 15 13 11 18 18 H 1.48496 * 109.47072 * 330.00143 * 15 13 11 19 19 C 1.38576 * 119.22469 * 0.02562 * 8 7 6 20 20 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 25 25 H 1.08001 * 119.65336 * 0.02562 * 5 4 3 26 26 H 1.07998 * 119.55164 * 179.67930 * 7 6 5 27 27 H 1.08997 * 109.47447 * 30.02183 * 9 8 7 28 28 H 1.09002 * 109.47070 * 150.01721 * 9 8 7 29 29 H 1.08996 * 109.47109 * 300.00051 * 10 9 8 30 30 H 1.09003 * 109.47425 * 60.00667 * 10 9 8 31 31 H 0.96998 * 119.99543 * 180.02562 * 14 13 11 32 32 H 1.07996 * 120.81030 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.2080 0.4322 0.0048 6 7 5.5154 0.6001 -0.0020 7 6 6.0614 1.8006 -0.0016 8 6 5.2755 2.9375 -0.0010 9 6 5.9114 4.3038 -0.0012 10 6 6.1278 4.7657 1.4412 11 6 6.7643 6.1317 1.4411 12 1 6.9913 6.6216 0.5058 13 6 7.0558 6.7565 2.6351 14 7 7.6108 7.9489 2.6350 15 14 6.6624 5.9096 4.2529 16 1 7.8275 5.0942 4.6809 17 1 6.3669 6.9324 5.2882 18 1 5.4801 5.0287 4.0758 19 6 3.8959 2.8063 -0.0003 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.7975 -0.5668 0.0089 26 1 7.1371 1.8965 -0.0021 27 1 6.8711 4.2579 -0.5159 28 1 5.2574 5.0089 -0.5143 29 1 5.1680 4.8117 1.9558 30 1 6.7818 4.0606 1.9544 31 1 7.8162 8.3882 3.4750 32 1 3.2575 3.6773 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060488.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:39 Heat of formation + Delta-G solvation = -22.767222 kcal Electronic energy + Delta-G solvation = -14265.198825 eV Core-core repulsion = 11804.576793 eV Total energy + Delta-G solvation = -2460.622032 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51005 -38.27089 -34.58333 -32.61966 -32.20675 -30.27688 -29.35600 -25.76482 -23.83404 -23.19622 -21.72885 -20.24045 -17.88873 -16.78504 -16.61120 -16.44259 -16.29172 -14.35774 -14.15895 -13.84286 -13.38788 -13.04826 -12.95549 -12.79384 -12.78445 -12.53924 -11.99775 -11.66236 -11.52466 -11.09672 -10.99447 -10.39545 -10.09809 -9.79143 -9.30989 -9.14966 -8.97771 -8.56020 -8.23480 -6.06907 -4.05729 1.34699 1.49883 3.04970 3.30426 3.37953 3.42498 3.99731 4.43739 4.59815 4.67583 4.69033 4.89948 4.99168 5.15550 5.23467 5.27516 5.33291 5.52872 5.59750 5.65795 5.78784 6.12384 6.15572 6.36856 6.60006 6.62442 6.83198 7.21566 7.28582 7.35998 7.74177 8.14069 8.49307 8.97291 9.55346 11.06296 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036898 B = 0.005922 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.669616 B = 4727.396105 C = 4993.933089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.313 6.313 4 C 0.078 3.922 5 C -0.005 4.005 6 N -0.452 5.452 7 C 0.058 3.942 8 C -0.070 4.070 9 C -0.068 4.068 10 C -0.006 4.006 11 C -0.523 4.523 12 H 0.074 0.926 13 C 0.069 3.931 14 N -0.902 5.902 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.113 4.113 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.150 0.850 26 H 0.158 0.842 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.017 0.983 30 H 0.014 0.986 31 H 0.264 0.736 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.337 -15.672 -5.172 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.226 6.226 4 C 0.031 3.969 5 C -0.162 4.162 6 N -0.161 5.161 7 C -0.099 4.099 8 C -0.072 4.072 9 C -0.106 4.106 10 C -0.044 4.044 11 C -0.561 4.561 12 H 0.092 0.908 13 C -0.133 4.133 14 N -0.541 5.541 15 Si 0.704 3.296 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.139 4.139 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.096 0.904 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.168 0.832 26 H 0.176 0.824 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.036 0.964 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.920 -16.134 -5.057 20.127 hybrid contribution -0.645 0.172 0.994 1.198 sum -11.565 -15.961 -4.063 20.125 Atomic orbital electron populations 1.21768 0.92701 1.02764 1.03620 1.22790 0.95966 0.82121 1.01451 1.86074 1.18621 1.29109 1.88776 1.20023 0.83195 0.95294 0.98407 1.22706 0.89683 0.97782 1.06065 1.67479 1.12162 1.26632 1.09780 1.22627 1.00702 0.86716 0.99899 1.21274 0.92813 0.98768 0.94360 1.20647 0.99884 0.89211 1.00876 1.19568 0.96860 0.96993 0.90949 1.21107 1.40083 1.00252 0.94623 0.90781 1.24995 0.94475 0.94671 0.99110 1.69910 1.42940 1.14265 1.26953 0.86814 0.79487 0.79541 0.83708 1.20179 1.21306 1.19041 1.20900 0.94933 0.95245 1.02814 0.91451 0.91493 0.90405 0.91963 0.91992 0.83249 0.82428 0.90798 0.91063 0.96422 0.96736 0.92666 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.48 5.47 37.16 0.20 0.69 16 3 O -0.31 -4.23 10.15 -19.48 -0.20 -4.43 16 4 C 0.08 1.18 6.71 -39.08 -0.26 0.92 16 5 C 0.00 -0.07 10.22 -17.37 -0.18 -0.24 16 6 N -0.45 -7.47 10.36 -13.13 -0.14 -7.61 16 7 C 0.06 0.98 10.85 -17.54 -0.19 0.79 16 8 C -0.07 -1.22 5.15 -104.50 -0.54 -1.76 16 9 C -0.07 -1.31 5.31 -27.88 -0.15 -1.46 16 10 C -0.01 -0.15 4.02 -27.88 -0.11 -0.26 16 11 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 12 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 15 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 19 C -0.11 -1.86 9.81 -39.14 -0.38 -2.24 16 20 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 24 H 0.06 0.50 7.69 -51.93 -0.40 0.10 16 25 H 0.15 1.72 6.32 -52.49 -0.33 1.39 16 26 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 27 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 28 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 29 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 30 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 275.12 15.07 4.15 4.15 Total: -1.00 -31.60 275.12 -6.18 -37.78 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.44 Total: -2.73 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.66 Total: -17.42 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.64 Total: -34.53 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.20 Total: -4.43 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.60 -6.18 -37.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060488.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.010 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds