Wall clock time and date at job start Sun Mar 29 2020 22:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35917 * 116.99522 * 180.02562 * 3 2 1 5 5 C 1.38748 * 120.47769 * 359.72104 * 4 3 2 6 6 N 1.31813 * 120.68304 * 179.68238 * 5 4 3 7 7 C 1.31880 * 121.77687 * 0.63220 * 6 5 4 8 8 C 1.38210 * 120.88760 * 359.66140 * 7 6 5 9 9 C 1.50706 * 120.38443 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46848 * 270.01718 * 9 8 7 11 11 C 1.50706 * 109.46848 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00017 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99892 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00072 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 120.00120 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46850 * 89.99776 * 15 13 11 17 17 H 1.48503 * 109.47571 * 209.99938 * 15 13 11 18 18 H 1.48496 * 109.47072 * 330.00143 * 15 13 11 19 19 C 1.38576 * 119.22469 * 0.02562 * 8 7 6 20 20 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 25 25 H 1.08001 * 119.65336 * 0.02562 * 5 4 3 26 26 H 1.07998 * 119.55164 * 179.67930 * 7 6 5 27 27 H 1.08997 * 109.47447 * 30.02183 * 9 8 7 28 28 H 1.09002 * 109.47070 * 150.01721 * 9 8 7 29 29 H 1.08996 * 109.47109 * 300.00051 * 10 9 8 30 30 H 1.09003 * 109.47425 * 60.00667 * 10 9 8 31 31 H 0.96998 * 119.99543 * 180.02562 * 14 13 11 32 32 H 1.07996 * 120.81030 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.2080 0.4322 0.0048 6 7 5.5154 0.6001 -0.0020 7 6 6.0614 1.8006 -0.0016 8 6 5.2755 2.9375 -0.0010 9 6 5.9114 4.3038 -0.0012 10 6 6.1278 4.7657 1.4412 11 6 6.7643 6.1317 1.4411 12 1 6.9913 6.6216 0.5058 13 6 7.0558 6.7565 2.6351 14 7 7.6108 7.9489 2.6350 15 14 6.6624 5.9096 4.2529 16 1 7.8275 5.0942 4.6809 17 1 6.3669 6.9324 5.2882 18 1 5.4801 5.0287 4.0758 19 6 3.8959 2.8063 -0.0003 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.7975 -0.5668 0.0089 26 1 7.1371 1.8965 -0.0021 27 1 6.8711 4.2579 -0.5159 28 1 5.2574 5.0089 -0.5143 29 1 5.1680 4.8117 1.9558 30 1 6.7818 4.0606 1.9544 31 1 7.8162 8.3882 3.4750 32 1 3.2575 3.6773 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060488.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:38 Heat of formation + Delta-G solvation = -42.682920 kcal Electronic energy + Delta-G solvation = -14266.062435 eV Core-core repulsion = 11804.576793 eV Total energy + Delta-G solvation = -2461.485641 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.66283 -39.34212 -36.25252 -34.41434 -33.24868 -31.61216 -30.71716 -27.42290 -24.94594 -24.34037 -23.16657 -21.75284 -19.21418 -18.64766 -17.79586 -17.65515 -17.15075 -16.37558 -15.29234 -15.01717 -14.86729 -14.71923 -14.46922 -14.03408 -13.65360 -13.58167 -13.41106 -13.10294 -12.86999 -12.42589 -12.14408 -11.92628 -11.84091 -11.68464 -11.38944 -10.77404 -10.44705 -10.32858 -9.40383 -8.30008 -6.33868 0.11892 0.26460 1.34803 1.36273 1.47873 2.11368 2.34896 2.76509 3.05608 3.51001 3.65060 3.86863 4.04547 4.05762 4.11543 4.22699 4.36333 4.40850 4.66548 4.70888 4.84965 4.90648 4.94592 5.01988 5.19932 5.24571 5.39814 5.53118 5.58478 5.65704 6.26128 6.27027 6.73980 6.92463 7.30965 8.86556 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036898 B = 0.005922 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.669616 B = 4727.396105 C = 4993.933089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.039 3.961 3 O -0.325 6.325 4 C 0.082 3.918 5 C 0.003 3.997 6 N -0.464 5.464 7 C 0.050 3.950 8 C -0.082 4.082 9 C -0.057 4.057 10 C -0.002 4.002 11 C -0.531 4.531 12 H 0.040 0.960 13 C 0.009 3.991 14 N -0.949 5.949 15 Si 0.944 3.056 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.253 1.253 19 C -0.125 4.125 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.104 0.896 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.184 0.816 26 H 0.168 0.832 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.015 0.985 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 -18.296 -4.622 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 O -0.238 6.238 4 C 0.034 3.966 5 C -0.155 4.155 6 N -0.173 5.173 7 C -0.107 4.107 8 C -0.084 4.084 9 C -0.095 4.095 10 C -0.039 4.039 11 C -0.569 4.569 12 H 0.058 0.942 13 C -0.188 4.188 14 N -0.589 5.589 15 Si 0.768 3.232 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.177 1.177 19 C -0.152 4.152 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.123 0.877 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.201 0.799 26 H 0.185 0.815 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.311 -18.771 -4.523 22.899 hybrid contribution -0.306 0.943 0.729 1.231 sum -12.617 -17.828 -3.793 22.168 Atomic orbital electron populations 1.21811 0.91230 1.04370 1.03168 1.23197 0.97199 0.80346 1.02788 1.86085 1.17481 1.31917 1.88349 1.20009 0.84208 0.94795 0.97575 1.23240 0.89027 0.99170 1.04112 1.67549 1.13138 1.26280 1.10322 1.22770 1.01258 0.86689 0.99989 1.20990 0.93295 0.97670 0.96470 1.20397 1.00420 0.90609 0.98122 1.19465 0.96055 0.94463 0.93936 1.21463 1.39837 1.02202 0.93403 0.94174 1.25915 0.94399 0.95295 1.03185 1.70053 1.44646 1.16096 1.28139 0.85744 0.79931 0.78669 0.78846 1.19060 1.20806 1.17716 1.21023 0.94765 0.96332 1.03051 0.92082 0.91796 0.87748 0.90764 0.90390 0.79937 0.81520 0.90460 0.91237 0.96641 0.96311 0.92438 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.04 0.60 5.47 71.98 0.39 0.99 16 3 O -0.33 -8.01 10.15 -92.61 -0.94 -8.95 16 4 C 0.08 2.30 6.71 22.60 0.15 2.45 16 5 C 0.00 0.07 10.22 84.82 0.87 0.94 16 6 N -0.46 -14.28 10.36 -195.44 -2.02 -16.30 16 7 C 0.05 1.60 10.85 84.68 0.92 2.52 16 8 C -0.08 -2.78 5.15 -19.79 -0.10 -2.89 16 9 C -0.06 -2.20 5.31 29.85 0.16 -2.05 16 10 C 0.00 -0.08 4.02 29.85 0.12 0.04 16 11 C -0.53 -30.44 9.66 25.60 0.25 -30.20 16 12 H 0.04 2.50 7.99 -2.91 -0.02 2.47 16 13 C 0.01 0.54 5.47 84.65 0.46 1.00 16 14 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 15 Si 0.94 44.81 27.47 68.60 1.88 46.69 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 18 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 19 C -0.13 -3.99 9.81 22.56 0.22 -3.77 16 20 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 21 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.07 0.98 7.67 -2.39 -0.02 0.96 16 24 H 0.08 0.97 7.69 -2.39 -0.02 0.95 16 25 H 0.18 3.44 6.32 -2.91 -0.02 3.42 16 26 H 0.17 4.85 8.06 -2.91 -0.02 4.82 16 27 H 0.08 2.86 8.09 -2.39 -0.02 2.84 16 28 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 29 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16 30 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 31 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -67.70 275.12 4.44 -63.26 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.04 Total: 6.43 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 4.18 Total: -31.95 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -1.72 Total: -75.49 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.94 Total: -8.95 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -67.70 4.44 -63.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060488.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.579 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds