Wall clock time and date at job start Sun Mar 29 2020 22:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46863 * 2 1 4 4 C 1.35677 * 116.99404 * 180.02562 * 3 2 1 5 5 C 1.38925 * 119.68043 * 179.97438 * 4 3 2 6 6 C 1.38381 * 119.10900 * 180.02562 * 5 4 3 7 7 C 1.38830 * 118.48403 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.34952 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47442 * 270.01969 * 8 7 6 10 10 C 1.50694 * 109.47448 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99648 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00377 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99556 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00424 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46873 * 59.99815 * 14 12 10 16 16 H 1.48497 * 109.47336 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46881 * 300.00210 * 14 12 10 18 18 C 1.38037 * 119.29315 * 359.97438 * 7 6 5 19 19 N 1.31964 * 120.83403 * 359.97438 * 18 7 6 20 20 H 1.09005 * 109.47117 * 59.99820 * 1 2 3 21 21 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47013 * 300.00293 * 1 2 3 23 23 H 1.08999 * 109.47060 * 240.00185 * 2 1 3 24 24 H 1.08997 * 109.46661 * 119.99737 * 2 1 3 25 25 H 1.08001 * 120.44570 * 359.97438 * 5 4 3 26 26 H 1.08004 * 120.75685 * 180.02562 * 6 5 4 27 27 H 1.08998 * 109.47435 * 30.02384 * 8 7 6 28 28 H 1.09004 * 109.46621 * 150.02524 * 8 7 6 29 29 H 1.08998 * 109.47145 * 300.00593 * 9 8 7 30 30 H 1.08999 * 109.46668 * 59.99903 * 9 8 7 31 31 H 0.97002 * 119.99832 * 180.02562 * 13 12 10 32 32 H 1.08004 * 119.58455 * 179.97438 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5250 -0.0005 5 6 3.8753 2.8117 -0.0011 6 6 5.2489 2.9792 -0.0022 7 6 6.0539 1.8481 -0.0032 8 6 7.5550 1.9818 -0.0050 9 6 8.0613 2.0276 -1.4481 10 6 9.5624 2.1606 -1.4499 11 1 10.1014 2.2082 -0.5151 12 6 10.2476 2.2227 -2.6447 13 7 9.5911 2.1663 -3.7828 14 14 12.1082 2.3883 -2.6469 15 1 12.7096 1.2239 -1.9485 16 1 12.5995 2.4339 -4.0475 17 1 12.4946 3.6394 -1.9463 18 6 5.4647 0.5998 -0.0026 19 7 4.1513 0.4718 -0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.2194 3.6697 -0.0015 26 1 5.6848 3.9674 -0.0022 27 1 7.8387 2.9002 0.5089 28 1 7.9964 1.1272 0.5079 29 1 7.7777 1.1092 -1.9620 30 1 7.6198 2.8821 -1.9610 31 1 10.0732 2.2095 -4.6235 32 1 6.0864 -0.2833 -0.0038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:14 Heat of formation + Delta-G solvation = -26.248887 kcal Electronic energy + Delta-G solvation = -14135.990575 eV Core-core repulsion = 11675.217567 eV Total energy + Delta-G solvation = -2460.773008 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31612 -37.95619 -34.23236 -32.40481 -32.11173 -31.04119 -28.54153 -25.07422 -24.12431 -22.53094 -22.01167 -20.31593 -18.29159 -16.58718 -16.39982 -16.14640 -14.68490 -14.47572 -14.29786 -13.88105 -13.80187 -12.89572 -12.78375 -12.55788 -12.50416 -12.15259 -11.72618 -11.50967 -11.10540 -10.92891 -10.68709 -10.55376 -9.96733 -9.78683 -9.37152 -9.29803 -9.07673 -8.36928 -7.89931 -6.01702 -4.05322 1.49728 1.65982 3.19571 3.32320 3.37059 3.39135 4.12496 4.44550 4.62070 4.95510 5.00593 5.22803 5.31857 5.33888 5.35513 5.42321 5.53488 5.75883 5.78271 5.88906 5.94894 6.27646 6.35964 6.58360 6.73568 6.81402 7.02667 7.49957 7.64298 7.76557 7.97223 8.16622 8.37487 9.01531 9.59043 11.09235 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.066731 B = 0.004739 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.496908 B = 5906.689999 C = 5997.803499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.314 6.314 4 C 0.297 3.703 5 C -0.188 4.188 6 C -0.045 4.045 7 C -0.141 4.141 8 C -0.071 4.071 9 C 0.029 3.971 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.132 3.868 19 N -0.540 5.540 20 H 0.063 0.937 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.135 0.865 26 H 0.140 0.860 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.261 0.739 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.519 -1.878 7.839 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.222 6.222 4 C 0.118 3.882 5 C -0.209 4.209 6 C -0.070 4.070 7 C -0.143 4.143 8 C -0.109 4.109 9 C -0.008 4.008 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.023 4.023 19 N -0.263 5.263 20 H 0.082 0.918 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.153 0.847 26 H 0.157 0.843 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.105 -2.527 7.642 16.240 hybrid contribution 1.443 0.677 -0.223 1.610 sum -12.662 -1.850 7.420 14.792 Atomic orbital electron populations 1.21812 0.93445 1.02599 1.03080 1.22505 0.94291 0.81660 1.02373 1.86180 1.17387 1.30074 1.88562 1.19692 0.83631 0.90178 0.94663 1.20989 0.95766 0.95407 1.08719 1.21371 0.91808 0.99589 0.94261 1.21220 0.99134 0.93404 1.00567 1.20716 0.86876 1.01486 1.01810 1.19094 0.95500 0.97531 0.88715 1.21206 0.92087 1.50606 0.92349 0.92567 1.25025 0.98440 0.95260 0.95646 1.69963 1.35678 1.50374 0.97308 0.86644 0.85626 0.78694 0.76958 1.20192 1.21299 1.20221 1.22308 0.88521 0.97345 0.94082 1.67260 1.06736 1.33150 1.19171 0.91775 0.90557 0.91861 0.91801 0.91933 0.84737 0.84261 0.92012 0.91928 0.96435 0.96481 0.92892 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.07 0.82 6.03 37.16 0.22 1.04 16 3 O -0.31 -4.72 10.12 -18.73 -0.19 -4.91 16 4 C 0.30 4.94 7.49 -17.12 -0.13 4.81 16 5 C -0.19 -2.92 10.04 -39.27 -0.39 -3.31 16 6 C -0.04 -0.73 9.85 -39.31 -0.39 -1.12 16 7 C -0.14 -2.54 5.15 -104.47 -0.54 -3.07 16 8 C -0.07 -1.41 5.30 -27.88 -0.15 -1.56 16 9 C 0.03 0.73 4.95 -27.89 -0.14 0.59 16 10 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 11 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.13 2.31 10.85 -17.57 -0.19 2.12 16 19 N -0.54 -9.39 9.22 -13.33 -0.12 -9.51 16 20 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 24 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 25 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 26 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16 27 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 28 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.16 2.48 8.06 -52.48 -0.42 2.05 16 LS Contribution 281.33 15.07 4.24 4.24 Total: -1.00 -30.78 281.33 -6.69 -37.47 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -4.61 Total: -2.82 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.73 Total: -14.79 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.61 Total: -35.57 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.19 Total: -4.91 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.78 -6.69 -37.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.220 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds