Wall clock time and date at job start Sun Mar 29 2020 22:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46863 * 2 1 4 4 C 1.35677 * 116.99404 * 180.02562 * 3 2 1 5 5 C 1.38925 * 119.68043 * 179.97438 * 4 3 2 6 6 C 1.38381 * 119.10900 * 180.02562 * 5 4 3 7 7 C 1.38830 * 118.48403 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.34952 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47442 * 270.01969 * 8 7 6 10 10 C 1.50694 * 109.47448 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99648 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00377 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99556 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00424 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46873 * 59.99815 * 14 12 10 16 16 H 1.48497 * 109.47336 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46881 * 300.00210 * 14 12 10 18 18 C 1.38037 * 119.29315 * 359.97438 * 7 6 5 19 19 N 1.31964 * 120.83403 * 359.97438 * 18 7 6 20 20 H 1.09005 * 109.47117 * 59.99820 * 1 2 3 21 21 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47013 * 300.00293 * 1 2 3 23 23 H 1.08999 * 109.47060 * 240.00185 * 2 1 3 24 24 H 1.08997 * 109.46661 * 119.99737 * 2 1 3 25 25 H 1.08001 * 120.44570 * 359.97438 * 5 4 3 26 26 H 1.08004 * 120.75685 * 180.02562 * 6 5 4 27 27 H 1.08998 * 109.47435 * 30.02384 * 8 7 6 28 28 H 1.09004 * 109.46621 * 150.02524 * 8 7 6 29 29 H 1.08998 * 109.47145 * 300.00593 * 9 8 7 30 30 H 1.08999 * 109.46668 * 59.99903 * 9 8 7 31 31 H 0.97002 * 119.99832 * 180.02562 * 13 12 10 32 32 H 1.08004 * 119.58455 * 179.97438 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5250 -0.0005 5 6 3.8753 2.8117 -0.0011 6 6 5.2489 2.9792 -0.0022 7 6 6.0539 1.8481 -0.0032 8 6 7.5550 1.9818 -0.0050 9 6 8.0613 2.0276 -1.4481 10 6 9.5624 2.1606 -1.4499 11 1 10.1014 2.2082 -0.5151 12 6 10.2476 2.2227 -2.6447 13 7 9.5911 2.1663 -3.7828 14 14 12.1082 2.3883 -2.6469 15 1 12.7096 1.2239 -1.9485 16 1 12.5995 2.4339 -4.0475 17 1 12.4946 3.6394 -1.9463 18 6 5.4647 0.5998 -0.0026 19 7 4.1513 0.4718 -0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.2194 3.6697 -0.0015 26 1 5.6848 3.9674 -0.0022 27 1 7.8387 2.9002 0.5089 28 1 7.9964 1.1272 0.5079 29 1 7.7777 1.1092 -1.9620 30 1 7.6198 2.8821 -1.9610 31 1 10.0732 2.2095 -4.6235 32 1 6.0864 -0.2833 -0.0038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:13 Heat of formation + Delta-G solvation = -45.536010 kcal Electronic energy + Delta-G solvation = -14136.826927 eV Core-core repulsion = 11675.217567 eV Total energy + Delta-G solvation = -2461.609361 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.58451 -39.16840 -36.02260 -34.18077 -33.27073 -32.27588 -30.17619 -26.87619 -25.27387 -24.08842 -23.18627 -21.96461 -19.47988 -18.52678 -17.86065 -17.24970 -16.51985 -16.03532 -15.54161 -15.08414 -14.95426 -14.49955 -14.37479 -14.05433 -13.58785 -13.37712 -13.25388 -12.81612 -12.70544 -12.50543 -12.36181 -11.83937 -11.75559 -11.49789 -11.24045 -10.74597 -10.57801 -10.50000 -9.26366 -8.17646 -6.29546 0.20067 0.33357 1.42865 1.45577 1.53435 2.08055 2.43036 2.80481 3.15694 3.37096 3.96947 4.07029 4.08960 4.11627 4.14815 4.34195 4.47347 4.59709 4.84595 4.85846 4.89298 4.95801 5.00705 5.16574 5.21077 5.36659 5.51235 5.56415 5.77433 5.86292 6.23921 6.28825 6.85272 6.88247 7.40188 8.93600 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.066731 B = 0.004739 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.496908 B = 5906.689999 C = 5997.803499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 O -0.317 6.317 4 C 0.289 3.711 5 C -0.186 4.186 6 C -0.045 4.045 7 C -0.161 4.161 8 C -0.054 4.054 9 C 0.034 3.966 10 C -0.543 4.543 11 H 0.066 0.934 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.965 3.035 15 H -0.266 1.266 16 H -0.286 1.286 17 H -0.265 1.265 18 C 0.125 3.875 19 N -0.552 5.552 20 H 0.064 0.936 21 H 0.099 0.901 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.163 0.837 26 H 0.157 0.843 27 H 0.072 0.928 28 H 0.070 0.930 29 H -0.012 1.012 30 H -0.009 1.009 31 H 0.263 0.737 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 -1.550 8.845 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.015 4.015 3 O -0.226 6.226 4 C 0.110 3.890 5 C -0.206 4.206 6 C -0.070 4.070 7 C -0.163 4.163 8 C -0.092 4.092 9 C -0.003 4.003 10 C -0.581 4.581 11 H 0.084 0.916 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.789 3.211 15 H -0.191 1.191 16 H -0.212 1.212 17 H -0.190 1.190 18 C -0.030 4.030 19 N -0.275 5.275 20 H 0.084 0.916 21 H 0.117 0.883 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.180 0.820 26 H 0.175 0.825 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.328 -2.202 8.670 16.892 hybrid contribution 1.393 0.550 -0.538 1.591 sum -12.936 -1.652 8.132 15.369 Atomic orbital electron populations 1.21821 0.90643 1.04250 1.03421 1.22764 0.96468 0.80371 1.01893 1.86195 1.16412 1.31743 1.88204 1.20050 0.84312 0.90573 0.94074 1.21284 0.95782 0.95994 1.07551 1.21622 0.92189 0.99895 0.93293 1.21092 0.98106 0.94405 1.02697 1.20424 0.88342 1.02367 0.98079 1.18954 0.94723 0.94807 0.91831 1.21699 0.93477 1.50031 0.92847 0.91575 1.25988 1.03798 0.94824 0.95232 1.70110 1.37801 1.51613 0.98016 0.85501 0.79212 0.79282 0.77059 1.19081 1.21195 1.19016 1.22468 0.88844 0.97645 0.93995 1.67281 1.06655 1.33785 1.19812 0.91643 0.88258 0.91258 0.92685 0.92045 0.81973 0.82509 0.90982 0.91147 0.99330 0.99107 0.92870 0.81720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 10.28 71.98 0.74 -1.52 16 2 C 0.06 1.40 6.03 71.98 0.43 1.83 16 3 O -0.32 -9.14 10.12 -89.95 -0.91 -10.05 16 4 C 0.29 9.32 7.49 84.80 0.63 9.95 16 5 C -0.19 -5.46 10.04 22.47 0.23 -5.23 16 6 C -0.04 -1.40 9.85 22.45 0.22 -1.18 16 7 C -0.16 -5.72 5.15 -19.77 -0.10 -5.82 16 8 C -0.05 -2.14 5.30 29.85 0.16 -1.98 16 9 C 0.03 1.76 4.95 29.85 0.15 1.91 16 10 C -0.54 -30.22 9.11 25.60 0.23 -29.98 16 11 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 12 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 13 N -0.94 -57.01 13.29 21.45 0.28 -56.72 16 14 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 C 0.13 4.35 10.85 84.63 0.92 5.27 16 19 N -0.55 -18.96 9.22 -308.95 -2.85 -21.80 16 20 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 21 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.07 1.01 8.14 -2.38 -0.02 1.00 16 23 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 24 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 25 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 26 H 0.16 4.27 8.06 -2.91 -0.02 4.24 16 27 H 0.07 2.66 8.09 -2.39 -0.02 2.65 16 28 H 0.07 2.63 8.09 -2.38 -0.02 2.61 16 29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.17 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -65.72 281.33 3.71 -62.01 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.08 Total: 7.19 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 4.07 Total: -26.34 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.56 Total: -78.53 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.91 Total: -10.05 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -65.72 3.71 -62.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.473 kcal (2) G-P(sol) polarization free energy of solvation -65.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds