Wall clock time and date at job start Sun Mar 29 2020 22:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35676 * 117.00176 * 180.02562 * 3 2 1 5 5 N 1.32276 * 119.68324 * 359.97438 * 4 3 2 6 6 C 1.31936 * 121.64885 * 179.97438 * 5 4 3 7 7 C 1.38091 * 120.83342 * 0.02562 * 6 5 4 8 8 C 1.38788 * 119.28648 * 359.97438 * 7 6 5 9 9 C 1.38424 * 118.48619 * 359.75515 * 8 7 6 10 10 C 1.50693 * 120.44682 * 180.24359 * 9 8 7 11 11 C 1.53004 * 109.47132 * 265.25179 * 10 9 8 12 12 C 1.50700 * 109.46886 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00186 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99703 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99846 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00110 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47092 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47666 * 120.00327 * 16 14 12 19 19 H 1.48506 * 109.47079 * 240.00011 * 16 14 12 20 20 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 22 22 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 24 24 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 25 25 H 1.08003 * 119.58431 * 179.97438 * 6 5 4 26 26 H 1.08000 * 120.35648 * 180.02562 * 7 6 5 27 27 H 1.07997 * 120.75822 * 180.02562 * 8 7 6 28 28 H 1.09000 * 109.47168 * 25.24945 * 10 9 8 29 29 H 1.08997 * 109.47511 * 145.24995 * 10 9 8 30 30 H 1.08995 * 109.46859 * 299.99459 * 11 10 9 31 31 H 1.08997 * 109.47072 * 59.99547 * 11 10 9 32 32 H 0.97006 * 119.99817 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3514 1.5250 -0.0005 5 7 4.1514 0.4716 -0.0005 6 6 5.4645 0.5995 -0.0015 7 6 6.0540 1.8482 -0.0021 8 6 5.2492 2.9789 -0.0022 9 6 3.8752 2.8113 -0.0069 10 6 2.9598 4.0083 -0.0126 11 6 2.5499 4.3439 1.4228 12 6 1.6351 5.5414 1.4170 13 1 1.3719 6.0154 0.4830 14 6 1.1332 6.0312 2.6041 15 7 1.4532 5.4536 3.7415 16 14 -0.0014 7.5151 2.5970 17 1 -0.2041 7.9766 1.2000 18 1 -1.3103 7.1404 3.1898 19 1 0.6087 8.6085 3.3954 20 1 -0.3635 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 6.0863 -0.2837 -0.0011 26 1 7.1298 1.9440 -0.0034 27 1 5.6850 3.9670 -0.0031 28 1 3.4791 4.8606 -0.4509 29 1 2.0705 3.7829 -0.6012 30 1 2.0306 3.4916 1.8609 31 1 3.4393 4.5693 2.0113 32 1 1.1004 5.7984 4.5767 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250061193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:24 Heat of formation + Delta-G solvation = -23.459532 kcal Electronic energy + Delta-G solvation = -14667.661553 eV Core-core repulsion = 12207.009500 eV Total energy + Delta-G solvation = -2460.652053 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.28180 -37.59642 -34.44471 -32.45368 -31.79213 -30.48324 -28.71768 -25.22116 -23.83659 -22.40919 -21.85813 -20.26634 -18.07997 -16.52177 -16.33733 -15.86844 -15.12010 -14.44608 -13.96359 -13.66084 -13.55972 -12.78418 -12.69813 -12.33419 -12.31929 -12.04878 -11.63771 -11.25244 -11.04445 -10.90441 -10.57810 -10.47596 -9.90791 -9.75516 -9.28442 -9.14887 -8.96057 -8.30823 -7.85260 -5.95647 -3.98011 1.55744 1.65550 3.33413 3.40670 3.43824 3.45051 4.15541 4.49312 4.62752 5.17983 5.23767 5.29419 5.35372 5.40040 5.49246 5.52266 5.62393 5.88604 6.02991 6.06019 6.18283 6.29563 6.48762 6.68162 6.78674 6.83486 7.13136 7.70227 7.73115 7.88521 8.04766 8.20750 8.45697 9.09021 9.65393 11.15582 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.007835 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.449571 B = 3573.061332 C = 4318.454687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.068 3.932 3 O -0.292 6.292 4 C 0.320 3.680 5 N -0.545 5.545 6 C 0.113 3.887 7 C -0.211 4.211 8 C -0.052 4.052 9 C -0.124 4.124 10 C -0.067 4.067 11 C 0.032 3.968 12 C -0.517 4.517 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.151 0.849 26 H 0.130 0.870 27 H 0.138 0.862 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.020 0.980 31 H 0.014 0.986 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 -9.558 -7.804 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 O -0.199 6.199 4 C 0.141 3.859 5 N -0.269 5.269 6 C -0.042 4.042 7 C -0.231 4.231 8 C -0.077 4.077 9 C -0.127 4.127 10 C -0.105 4.105 11 C -0.005 4.005 12 C -0.556 4.556 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.168 0.832 26 H 0.148 0.852 27 H 0.156 0.844 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.330 -10.196 -7.619 13.445 hybrid contribution -0.097 1.327 0.229 1.350 sum 4.233 -8.869 -7.390 12.296 Atomic orbital electron populations 1.21803 0.93275 1.02236 1.03765 1.22506 0.94726 0.81819 1.01730 1.86368 1.16657 1.29448 1.87397 1.19662 0.83966 0.89483 0.92819 1.67252 1.06594 1.33374 1.19650 1.22177 0.89274 0.96994 0.95743 1.21877 1.00859 0.93491 1.06911 1.21366 0.92012 0.99412 0.94914 1.20454 0.95139 0.94397 1.02660 1.20657 0.96276 0.91501 1.02076 1.19045 0.96218 0.96541 0.88687 1.21278 1.28391 1.13151 0.92744 0.92546 1.25022 0.96633 0.97161 0.95656 1.69993 1.45025 1.40838 0.97589 0.86549 0.80664 0.82810 0.78053 1.19711 1.21040 1.21069 0.90836 0.91217 0.91737 0.92308 0.92041 0.83175 0.85192 0.84430 0.92218 0.91585 0.96208 0.96792 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 37.16 0.38 -1.61 16 2 C 0.07 1.04 6.03 37.16 0.22 1.27 16 3 O -0.29 -5.73 9.27 -18.73 -0.17 -5.90 16 4 C 0.32 6.24 7.47 -17.12 -0.13 6.11 16 5 N -0.54 -9.52 9.22 -13.33 -0.12 -9.65 16 6 C 0.11 1.64 11.18 -17.56 -0.20 1.44 16 7 C -0.21 -2.94 10.11 -39.43 -0.40 -3.34 16 8 C -0.05 -0.85 9.83 -39.31 -0.39 -1.24 16 9 C -0.12 -2.42 5.17 -104.32 -0.54 -2.96 16 10 C -0.07 -1.47 5.03 -27.88 -0.14 -1.61 16 11 C 0.03 0.86 4.96 -27.88 -0.14 0.72 16 12 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 24 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 25 H 0.15 1.62 8.06 -52.48 -0.42 1.19 16 26 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 27 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 28 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 29 H 0.07 1.46 7.71 -51.93 -0.40 1.06 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 280.16 15.07 4.22 4.22 Total: -1.00 -32.35 280.16 -6.67 -39.02 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -4.58 Total: -2.99 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.73 Total: -14.91 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.61 Total: -36.36 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.17 Total: -5.90 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.35 -6.67 -39.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.563 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds