Wall clock time and date at job start Sun Mar 29 2020 22:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35676 * 117.00176 * 180.02562 * 3 2 1 5 5 N 1.32276 * 119.68324 * 359.97438 * 4 3 2 6 6 C 1.31936 * 121.64885 * 179.97438 * 5 4 3 7 7 C 1.38091 * 120.83342 * 0.02562 * 6 5 4 8 8 C 1.38788 * 119.28648 * 359.97438 * 7 6 5 9 9 C 1.38424 * 118.48619 * 359.75515 * 8 7 6 10 10 C 1.50693 * 120.44682 * 180.24359 * 9 8 7 11 11 C 1.53004 * 109.47132 * 265.25179 * 10 9 8 12 12 C 1.50700 * 109.46886 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00186 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99703 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99846 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00110 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47092 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47666 * 120.00327 * 16 14 12 19 19 H 1.48506 * 109.47079 * 240.00011 * 16 14 12 20 20 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 22 22 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 24 24 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 25 25 H 1.08003 * 119.58431 * 179.97438 * 6 5 4 26 26 H 1.08000 * 120.35648 * 180.02562 * 7 6 5 27 27 H 1.07997 * 120.75822 * 180.02562 * 8 7 6 28 28 H 1.09000 * 109.47168 * 25.24945 * 10 9 8 29 29 H 1.08997 * 109.47511 * 145.24995 * 10 9 8 30 30 H 1.08995 * 109.46859 * 299.99459 * 11 10 9 31 31 H 1.08997 * 109.47072 * 59.99547 * 11 10 9 32 32 H 0.97006 * 119.99817 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3514 1.5250 -0.0005 5 7 4.1514 0.4716 -0.0005 6 6 5.4645 0.5995 -0.0015 7 6 6.0540 1.8482 -0.0021 8 6 5.2492 2.9789 -0.0022 9 6 3.8752 2.8113 -0.0069 10 6 2.9598 4.0083 -0.0126 11 6 2.5499 4.3439 1.4228 12 6 1.6351 5.5414 1.4170 13 1 1.3719 6.0154 0.4830 14 6 1.1332 6.0312 2.6041 15 7 1.4532 5.4536 3.7415 16 14 -0.0014 7.5151 2.5970 17 1 -0.2041 7.9766 1.2000 18 1 -1.3103 7.1404 3.1898 19 1 0.6087 8.6085 3.3954 20 1 -0.3635 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 6.0863 -0.2837 -0.0011 26 1 7.1298 1.9440 -0.0034 27 1 5.6850 3.9670 -0.0031 28 1 3.4791 4.8606 -0.4509 29 1 2.0705 3.7829 -0.6012 30 1 2.0306 3.4916 1.8609 31 1 3.4393 4.5693 2.0113 32 1 1.1004 5.7984 4.5767 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250061193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:23 Heat of formation + Delta-G solvation = -44.867744 kcal Electronic energy + Delta-G solvation = -14668.589883 eV Core-core repulsion = 12207.009500 eV Total energy + Delta-G solvation = -2461.580383 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.59449 -38.90786 -36.26891 -34.38045 -32.97750 -31.96919 -30.33262 -27.09974 -25.10611 -24.08032 -23.13924 -21.99121 -19.38311 -18.56096 -17.80337 -17.20924 -16.51978 -16.32145 -15.38162 -14.96475 -14.88045 -14.57188 -14.35840 -13.99180 -13.42490 -13.34330 -13.26057 -12.90341 -12.81194 -12.46634 -12.34418 -11.88031 -11.68771 -11.66257 -11.24831 -10.60130 -10.55484 -10.47233 -9.22668 -8.19552 -6.31651 0.27040 0.38009 1.39591 1.40437 1.54140 2.18667 2.41030 2.87647 3.13036 3.41911 3.96953 4.07707 4.12259 4.15212 4.19248 4.38729 4.43357 4.61832 4.80152 4.83123 4.87749 4.93518 5.11908 5.17880 5.22921 5.34370 5.49036 5.64903 5.74341 5.83564 6.22584 6.40862 6.84775 6.92920 7.37441 8.92445 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.007835 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.449571 B = 3573.061332 C = 4318.454687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 O -0.323 6.323 4 C 0.297 3.703 5 N -0.556 5.556 6 C 0.116 3.884 7 C -0.198 4.198 8 C -0.053 4.053 9 C -0.163 4.163 10 C -0.050 4.050 11 C 0.044 3.956 12 C -0.541 4.541 13 H 0.062 0.938 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.260 1.260 18 H -0.279 1.279 19 H -0.276 1.276 20 H 0.108 0.892 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.195 0.805 26 H 0.175 0.825 27 H 0.154 0.846 28 H 0.071 0.929 29 H 0.054 0.946 30 H -0.019 1.019 31 H -0.011 1.011 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 -9.725 -8.696 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.012 4.012 3 O -0.231 6.231 4 C 0.119 3.881 5 N -0.280 5.280 6 C -0.039 4.039 7 C -0.217 4.217 8 C -0.078 4.078 9 C -0.166 4.166 10 C -0.088 4.088 11 C 0.007 3.993 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.184 1.184 18 H -0.205 1.205 19 H -0.201 1.201 20 H 0.126 0.874 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.212 0.788 26 H 0.193 0.807 27 H 0.172 0.828 28 H 0.090 0.910 29 H 0.073 0.927 30 H -0.001 1.001 31 H 0.008 0.992 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.387 -10.369 -8.527 14.465 hybrid contribution -0.305 1.269 0.515 1.403 sum 5.082 -9.100 -8.012 13.146 Atomic orbital electron populations 1.21832 0.91679 1.04197 1.02783 1.22736 0.96011 0.80420 1.01994 1.86327 1.17383 1.31725 1.87677 1.19828 0.84223 0.90069 0.93962 1.67332 1.07940 1.32621 1.20094 1.23052 0.88572 0.99072 0.93216 1.22337 1.02817 0.92147 1.04417 1.21702 0.90944 1.01411 0.93762 1.20377 0.96304 0.93538 1.06407 1.20297 0.96732 0.93391 0.98337 1.18828 0.94442 0.94568 0.91501 1.21710 1.28992 1.13909 0.93255 0.91940 1.26021 0.98271 1.00525 0.95094 1.70135 1.46303 1.42663 0.98395 0.85359 0.78169 0.78563 0.78713 1.18392 1.20460 1.20106 0.87355 0.93159 0.91653 0.91082 0.92536 0.78837 0.80731 0.82816 0.91005 0.92744 1.00067 0.99219 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 10.28 71.98 0.74 -3.11 16 2 C 0.06 1.98 6.03 71.98 0.43 2.42 16 3 O -0.32 -13.26 9.27 -89.93 -0.83 -14.10 16 4 C 0.30 11.80 7.47 84.78 0.63 12.43 16 5 N -0.56 -18.86 9.22 -308.93 -2.85 -21.71 16 6 C 0.12 3.00 11.18 84.64 0.95 3.95 16 7 C -0.20 -4.82 10.11 22.37 0.23 -4.60 16 8 C -0.05 -1.66 9.83 22.45 0.22 -1.44 16 9 C -0.16 -6.50 5.17 -19.67 -0.10 -6.60 16 10 C -0.05 -2.25 5.03 29.85 0.15 -2.10 16 11 C 0.04 2.46 4.96 29.85 0.15 2.61 16 12 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 13 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 14 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 15 N -0.93 -58.79 13.29 21.45 0.28 -58.51 16 16 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 24 H 0.06 1.77 8.10 -2.39 -0.02 1.76 16 25 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 26 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 27 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 28 H 0.07 2.98 8.06 -2.39 -0.02 2.96 16 29 H 0.05 2.52 7.71 -2.39 -0.02 2.50 16 30 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 31 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 32 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -72.64 280.16 3.81 -68.84 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 1.08 Total: 6.01 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 4.09 Total: -27.87 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -2.56 Total: -80.22 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.83 Total: -14.10 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -72.64 3.81 -68.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.970 kcal (2) G-P(sol) polarization free energy of solvation -72.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds