Wall clock time and date at job start Sun Mar 29 2020 21:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35675 * 116.99964 * 2 1 4 4 N 1.32273 * 119.68588 * 0.02562 * 3 2 1 5 5 C 1.31932 * 121.64977 * 180.02562 * 4 3 2 6 6 C 1.38093 * 120.83134 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.35527 * 179.97438 * 6 5 4 8 8 C 1.38783 * 119.28967 * 0.25546 * 6 5 4 9 9 C 1.38423 * 118.48281 * 359.46132 * 8 6 5 10 10 C 1.50697 * 120.44628 * 180.23997 * 9 8 6 11 11 C 1.52996 * 109.47227 * 100.31853 * 10 9 8 12 12 C 1.50705 * 109.47196 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99921 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99866 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00366 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47262 * 89.99691 * 16 14 12 18 18 H 1.48498 * 109.47112 * 210.00036 * 16 14 12 19 19 H 1.48502 * 109.46976 * 330.00097 * 16 14 12 20 20 H 1.09000 * 109.47305 * 59.99755 * 1 2 3 21 21 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.46741 * 299.99899 * 1 2 3 23 23 H 1.07995 * 119.58587 * 180.02562 * 5 4 3 24 24 H 1.09001 * 109.46953 * 90.00142 * 7 6 5 25 25 H 1.09000 * 109.47318 * 209.99740 * 7 6 5 26 26 H 1.09000 * 109.47161 * 330.00370 * 7 6 5 27 27 H 1.07997 * 120.75747 * 179.72237 * 8 6 5 28 28 H 1.08997 * 109.47578 * 220.32449 * 10 9 8 29 29 H 1.09000 * 109.46929 * 340.32162 * 10 9 8 30 30 H 1.08998 * 109.47422 * 300.00204 * 11 10 9 31 31 H 1.09000 * 109.46914 * 60.00299 * 11 10 9 32 32 H 0.97003 * 120.00309 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3142 0.0005 5 6 1.8768 3.5096 0.0000 6 6 3.2507 3.6491 -0.0016 7 6 3.8771 5.0198 -0.0027 8 6 4.0484 2.5134 -0.0081 9 6 3.4323 1.2739 -0.0013 10 6 4.2557 0.0118 -0.0025 11 6 4.3260 -0.5527 1.4178 12 6 5.1500 -1.8145 1.4167 13 1 5.5809 -2.1773 0.4952 14 6 5.3538 -2.5058 2.5921 15 7 4.8287 -2.0644 3.7141 16 14 6.3758 -4.0694 2.5909 17 1 7.8008 -3.7296 2.8339 18 1 5.8934 -4.9769 3.6628 19 1 6.2456 -4.7448 1.2747 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.2515 4.3901 0.0009 24 1 4.0293 5.3505 1.0247 25 1 4.8370 4.9802 -0.5175 26 1 3.2180 5.7200 -0.5159 27 1 5.1253 2.5949 -0.0139 28 1 3.7945 -0.7224 -0.6630 29 1 5.2627 0.2354 -0.3548 30 1 4.7873 0.1815 2.0782 31 1 3.3190 -0.7763 1.7700 32 1 4.9723 -2.5506 4.5411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250061294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:21 Heat of formation + Delta-G solvation = -24.113683 kcal Electronic energy + Delta-G solvation = -14652.392645 eV Core-core repulsion = 12191.712226 eV Total energy + Delta-G solvation = -2460.680419 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34591 -37.58882 -34.45353 -32.86124 -32.32929 -29.26662 -27.59197 -25.99439 -25.22514 -22.62230 -21.74622 -19.93675 -17.94634 -16.85373 -16.30963 -15.54680 -14.46659 -14.40806 -13.94616 -13.86292 -13.69153 -12.78221 -12.73548 -12.56062 -12.32170 -12.16264 -11.67256 -11.36625 -11.04368 -10.88574 -10.73076 -10.58785 -9.91354 -9.70394 -9.28876 -9.06677 -8.93027 -8.29791 -7.75803 -5.94786 -3.97249 1.53340 1.63783 3.34822 3.40836 3.44635 3.55592 4.10777 4.49795 4.64846 5.03602 5.15332 5.27784 5.40818 5.48728 5.58371 5.63966 5.66942 5.76381 5.86488 5.95829 6.03715 6.19859 6.54973 6.68600 6.75585 6.84620 7.12976 7.68753 7.73755 7.89815 8.05715 8.20993 8.46345 9.09597 9.66038 11.16460 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031697 B = 0.007193 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.164999 B = 3891.685709 C = 4458.599397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.292 6.292 3 C 0.313 3.687 4 N -0.541 5.541 5 C 0.114 3.886 6 C -0.179 4.179 7 C -0.099 4.099 8 C -0.053 4.053 9 C -0.119 4.119 10 C -0.067 4.067 11 C 0.032 3.968 12 C -0.518 4.518 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.051 0.949 21 H 0.092 0.908 22 H 0.054 0.946 23 H 0.150 0.850 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.137 0.863 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.013 0.987 31 H 0.022 0.978 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.135 10.729 -7.743 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.198 6.198 3 C 0.134 3.866 4 N -0.264 5.264 5 C -0.041 4.041 6 C -0.181 4.181 7 C -0.157 4.157 8 C -0.078 4.078 9 C -0.122 4.122 10 C -0.105 4.105 11 C -0.005 4.005 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 H 0.070 0.930 21 H 0.111 0.889 22 H 0.073 0.927 23 H 0.167 0.833 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.155 0.845 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.974 10.321 -7.556 14.118 hybrid contribution 1.117 -0.661 0.223 1.317 sum -4.858 9.660 -7.333 13.065 Atomic orbital electron populations 1.22778 0.78334 1.02594 1.01652 1.86387 1.21817 1.24098 1.87496 1.19695 0.89146 0.84415 0.93330 1.67228 1.40961 0.98796 1.19366 1.22048 0.92023 0.93471 0.96567 1.20673 0.94835 0.96430 1.06168 1.20580 1.00441 0.92513 1.02123 1.21250 1.00277 0.90360 0.95894 1.20440 0.91505 0.97905 1.02302 1.20658 0.96473 0.91168 1.02161 1.19042 0.97520 0.95184 0.88779 1.21242 1.31740 1.08629 0.94046 0.92609 1.25015 0.96022 0.97733 0.95658 1.69977 1.44914 1.39729 0.98847 0.86601 0.80391 0.83341 0.77706 1.20714 1.21264 1.19846 0.92996 0.88918 0.92689 0.83259 0.91438 0.91696 0.91832 0.84496 0.91593 0.92249 0.96857 0.96002 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 101.05 1.05 1.68 16 2 O -0.29 -5.79 9.66 -18.73 -0.18 -5.97 16 3 C 0.31 6.16 7.47 -17.12 -0.13 6.03 16 4 N -0.54 -9.54 9.22 -13.33 -0.12 -9.67 16 5 C 0.11 1.69 10.85 -17.56 -0.19 1.50 16 6 C -0.18 -2.55 5.90 -104.47 -0.62 -3.17 16 7 C -0.10 -1.01 10.04 36.01 0.36 -0.65 16 8 C -0.05 -0.87 9.49 -39.31 -0.37 -1.25 16 9 C -0.12 -2.34 5.17 -104.32 -0.54 -2.88 16 10 C -0.07 -1.46 4.97 -27.89 -0.14 -1.60 16 11 C 0.03 0.86 4.95 -27.88 -0.14 0.72 16 12 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H 0.05 0.71 8.10 -51.93 -0.42 0.28 16 21 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.05 0.82 8.10 -51.92 -0.42 0.40 16 23 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 28 H 0.07 1.45 7.87 -51.93 -0.41 1.04 16 29 H 0.06 1.21 8.03 -51.93 -0.42 0.79 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.64 8.07 -51.93 -0.42 0.22 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 279.76 15.07 4.22 4.22 Total: -1.00 -32.59 279.76 -6.08 -38.67 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -4.58 Total: -4.02 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -1.12 Total: -13.36 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.61 Total: -36.48 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.18 Total: -5.97 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.59 -6.08 -38.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.554 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds