Wall clock time and date at job start Sun Mar 29 2020 21:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35675 * 116.99964 * 2 1 4 4 N 1.32273 * 119.68588 * 0.02562 * 3 2 1 5 5 C 1.31932 * 121.64977 * 180.02562 * 4 3 2 6 6 C 1.38093 * 120.83134 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.35527 * 179.97438 * 6 5 4 8 8 C 1.38783 * 119.28967 * 0.25546 * 6 5 4 9 9 C 1.38423 * 118.48281 * 359.46132 * 8 6 5 10 10 C 1.50697 * 120.44628 * 180.23997 * 9 8 6 11 11 C 1.52996 * 109.47227 * 100.31853 * 10 9 8 12 12 C 1.50705 * 109.47196 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99921 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99866 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00366 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47262 * 89.99691 * 16 14 12 18 18 H 1.48498 * 109.47112 * 210.00036 * 16 14 12 19 19 H 1.48502 * 109.46976 * 330.00097 * 16 14 12 20 20 H 1.09000 * 109.47305 * 59.99755 * 1 2 3 21 21 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.46741 * 299.99899 * 1 2 3 23 23 H 1.07995 * 119.58587 * 180.02562 * 5 4 3 24 24 H 1.09001 * 109.46953 * 90.00142 * 7 6 5 25 25 H 1.09000 * 109.47318 * 209.99740 * 7 6 5 26 26 H 1.09000 * 109.47161 * 330.00370 * 7 6 5 27 27 H 1.07997 * 120.75747 * 179.72237 * 8 6 5 28 28 H 1.08997 * 109.47578 * 220.32449 * 10 9 8 29 29 H 1.09000 * 109.46929 * 340.32162 * 10 9 8 30 30 H 1.08998 * 109.47422 * 300.00204 * 11 10 9 31 31 H 1.09000 * 109.46914 * 60.00299 * 11 10 9 32 32 H 0.97003 * 120.00309 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3142 0.0005 5 6 1.8768 3.5096 0.0000 6 6 3.2507 3.6491 -0.0016 7 6 3.8771 5.0198 -0.0027 8 6 4.0484 2.5134 -0.0081 9 6 3.4323 1.2739 -0.0013 10 6 4.2557 0.0118 -0.0025 11 6 4.3260 -0.5527 1.4178 12 6 5.1500 -1.8145 1.4167 13 1 5.5809 -2.1773 0.4952 14 6 5.3538 -2.5058 2.5921 15 7 4.8287 -2.0644 3.7141 16 14 6.3758 -4.0694 2.5909 17 1 7.8008 -3.7296 2.8339 18 1 5.8934 -4.9769 3.6628 19 1 6.2456 -4.7448 1.2747 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.2515 4.3901 0.0009 24 1 4.0293 5.3505 1.0247 25 1 4.8370 4.9802 -0.5175 26 1 3.2180 5.7200 -0.5159 27 1 5.1253 2.5949 -0.0139 28 1 3.7945 -0.7224 -0.6630 29 1 5.2627 0.2354 -0.3548 30 1 4.7873 0.1815 2.0782 31 1 3.3190 -0.7763 1.7700 32 1 4.9723 -2.5506 4.5411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250061294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:20 Heat of formation + Delta-G solvation = -45.970886 kcal Electronic energy + Delta-G solvation = -14653.340445 eV Core-core repulsion = 12191.712226 eV Total energy + Delta-G solvation = -2461.628218 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.66661 -38.91307 -36.29060 -34.39285 -33.92383 -31.07161 -28.75428 -27.18549 -27.07320 -24.16724 -23.35025 -21.53040 -19.27411 -18.53172 -18.16276 -16.94180 -16.48489 -15.64700 -15.31692 -15.22530 -14.82671 -14.59358 -14.36445 -13.97475 -13.56087 -13.40155 -13.04436 -12.87514 -12.78502 -12.63183 -12.36573 -11.99697 -11.83963 -11.63547 -11.26411 -10.57132 -10.51911 -10.43272 -9.10216 -8.19015 -6.31298 0.23279 0.33646 1.39921 1.42225 1.53505 2.27609 2.41468 2.80945 3.13583 3.41372 3.88761 4.01952 4.08876 4.29978 4.41796 4.44151 4.49370 4.65031 4.70012 4.84023 4.90615 4.93877 5.11128 5.18397 5.25710 5.40688 5.49324 5.66415 5.74245 5.83985 6.22710 6.37465 6.85076 6.90260 7.37790 8.92898 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031697 B = 0.007193 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.164999 B = 3891.685709 C = 4458.599397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.325 6.325 3 C 0.289 3.711 4 N -0.549 5.549 5 C 0.115 3.885 6 C -0.169 4.169 7 C -0.096 4.096 8 C -0.055 4.055 9 C -0.155 4.155 10 C -0.049 4.049 11 C 0.043 3.957 12 C -0.542 4.542 13 H 0.063 0.937 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.969 3.031 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.262 1.262 20 H 0.065 0.935 21 H 0.112 0.888 22 H 0.051 0.949 23 H 0.191 0.809 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.056 0.944 29 H 0.071 0.929 30 H -0.014 1.014 31 H -0.015 1.015 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 11.957 -8.593 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.111 3.889 4 N -0.272 5.272 5 C -0.041 4.041 6 C -0.171 4.171 7 C -0.154 4.154 8 C -0.081 4.081 9 C -0.158 4.158 10 C -0.087 4.087 11 C 0.006 3.994 12 C -0.580 4.580 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.793 3.207 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.187 1.187 20 H 0.083 0.917 21 H 0.130 0.870 22 H 0.070 0.930 23 H 0.208 0.792 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.171 0.829 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.005 0.995 31 H 0.003 0.997 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.443 11.555 -8.423 15.300 hybrid contribution 0.886 -0.900 0.495 1.356 sum -4.558 10.655 -7.928 14.041 Atomic orbital electron populations 1.22985 0.76419 1.04082 1.02072 1.86327 1.24011 1.25032 1.87829 1.19845 0.89403 0.84954 0.94653 1.67292 1.41067 0.99206 1.19679 1.22867 0.93111 0.93671 0.94427 1.21133 0.94602 0.97717 1.03666 1.20683 1.01294 0.90123 1.03256 1.21562 1.01444 0.90054 0.94991 1.20362 0.91706 0.97988 1.05767 1.20308 0.97679 0.92310 0.98446 1.18825 0.94710 0.94388 0.91482 1.21688 1.32135 1.09570 0.94598 0.91882 1.26023 0.97204 1.01587 0.95077 1.70126 1.46303 1.41487 0.99642 0.85399 0.78719 0.78470 0.78161 1.19434 1.20790 1.18658 0.91676 0.86994 0.93025 0.79193 0.90493 0.90567 0.89196 0.82932 0.92556 0.90999 0.99517 0.99661 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.20 10.38 113.37 1.18 2.38 16 2 O -0.32 -13.43 9.66 -89.93 -0.87 -14.30 16 3 C 0.29 11.63 7.47 84.78 0.63 12.26 16 4 N -0.55 -19.00 9.22 -308.94 -2.85 -21.85 16 5 C 0.11 3.11 10.85 84.64 0.92 4.03 16 6 C -0.17 -4.39 5.90 -19.77 -0.12 -4.51 16 7 C -0.10 -1.58 10.04 71.24 0.71 -0.86 16 8 C -0.06 -1.78 9.49 22.44 0.21 -1.57 16 9 C -0.16 -6.25 5.17 -19.67 -0.10 -6.35 16 10 C -0.05 -2.24 4.97 29.85 0.15 -2.09 16 11 C 0.04 2.43 4.95 29.85 0.15 2.58 16 12 C -0.54 -32.13 9.11 25.60 0.23 -31.90 16 13 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 14 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 15 N -0.94 -59.00 13.29 21.45 0.28 -58.71 16 16 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 21 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 22 H 0.05 1.57 8.10 -2.38 -0.02 1.55 16 23 H 0.19 3.48 8.06 -2.91 -0.02 3.46 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 26 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 27 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.06 2.59 7.87 -2.39 -0.02 2.57 16 29 H 0.07 2.98 8.03 -2.39 -0.02 2.96 16 30 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 31 H -0.02 -0.95 8.07 -2.39 -0.02 -0.97 16 32 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -72.69 279.76 4.11 -68.57 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.09 Total: 4.62 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 4.43 Total: -25.66 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.56 Total: -80.56 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.87 Total: -14.30 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -72.69 4.11 -68.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.601 kcal (2) G-P(sol) polarization free energy of solvation -72.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds