Wall clock time and date at job start Sun Mar 29 2020 22:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 117.00193 * 2 1 4 4 C 1.38751 * 120.47136 * 359.97438 * 3 2 1 5 5 N 1.31808 * 120.67606 * 180.02562 * 4 3 2 6 6 C 1.31879 * 121.78372 * 359.73016 * 5 4 3 7 7 C 1.38210 * 120.88771 * 0.53642 * 6 5 4 8 8 C 1.50703 * 120.38953 * 179.75272 * 7 6 5 9 9 C 1.52996 * 109.46946 * 269.72320 * 8 7 6 10 10 C 1.52997 * 109.46947 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00200 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00139 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47145 * 89.99836 * 15 13 11 17 17 H 1.48496 * 109.47547 * 210.00333 * 15 13 11 18 18 H 1.48499 * 109.47030 * 330.00237 * 15 13 11 19 19 C 1.38579 * 119.22198 * 359.47516 * 7 6 5 20 20 H 1.08997 * 109.46805 * 299.99705 * 1 2 3 21 21 H 1.09004 * 109.47244 * 59.99738 * 1 2 3 22 22 H 1.09001 * 109.47015 * 179.97438 * 1 2 3 23 23 H 1.07993 * 119.65874 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.55521 * 180.26610 * 6 5 4 25 25 H 1.08992 * 109.46894 * 149.72038 * 8 7 6 26 26 H 1.08996 * 109.46805 * 29.72189 * 8 7 6 27 27 H 1.09001 * 109.47372 * 60.00128 * 9 8 7 28 28 H 1.09004 * 109.47108 * 299.99872 * 9 8 7 29 29 H 1.09001 * 109.46832 * 59.99979 * 10 9 8 30 30 H 1.09000 * 109.47611 * 300.00276 * 10 9 8 31 31 H 0.96999 * 120.00061 * 179.97438 * 14 13 11 32 32 H 1.07997 * 120.81359 * 180.22656 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8943 3.5574 -0.0010 6 6 3.2081 3.6720 0.0042 7 6 4.0180 2.5521 -0.0006 8 6 5.5181 2.6962 -0.0001 9 6 6.0263 2.7441 -1.4424 10 6 7.5492 2.8910 -1.4419 11 6 8.0499 2.9376 -2.8626 12 1 7.3516 2.8697 -3.6837 13 6 9.3992 3.0669 -3.1142 14 7 9.8361 3.1081 -4.3539 15 14 10.6070 3.1852 -1.6940 16 1 11.0609 1.8229 -1.3155 17 1 11.7777 4.0004 -2.1062 18 1 9.9423 3.8262 -0.5310 19 6 3.4345 1.2952 0.0000 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2215 2.3268 -0.0005 24 1 3.6571 4.6542 0.0080 25 1 5.9646 1.8454 0.5144 26 1 5.7945 3.6171 0.5133 27 1 5.5797 3.5950 -1.9569 28 1 5.7499 1.8231 -1.9558 29 1 7.9961 2.0404 -0.9273 30 1 7.8253 3.8121 -0.9286 31 1 10.7854 3.1995 -4.5309 32 1 4.0429 0.4028 0.0000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250063062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:41 Heat of formation + Delta-G solvation = -22.769898 kcal Electronic energy + Delta-G solvation = -14129.169579 eV Core-core repulsion = 11668.547431 eV Total energy + Delta-G solvation = -2460.622148 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66196 -38.30267 -35.21126 -32.91935 -31.56226 -30.41563 -27.90246 -27.09385 -23.85195 -23.39658 -21.32694 -20.09008 -17.89362 -17.08748 -16.68107 -16.59262 -16.01020 -14.54015 -14.36599 -13.89335 -13.78203 -13.56574 -13.04197 -12.75013 -12.18808 -12.15026 -12.09327 -11.65904 -11.57390 -11.06970 -10.76035 -10.04180 -9.88916 -9.72695 -9.38465 -9.23643 -9.09170 -8.52789 -8.41565 -6.02978 -4.01147 1.14528 1.31748 3.02552 3.31529 3.39004 3.42272 3.80688 4.46138 4.46407 4.60462 4.82320 4.88942 4.95736 5.09003 5.19605 5.27611 5.31430 5.39155 5.78985 5.85357 5.93111 6.15148 6.24715 6.53294 6.60141 6.65009 6.89297 7.10930 7.30644 7.43073 7.80492 7.96832 8.55481 9.02282 9.59395 11.10631 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050723 B = 0.004949 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.890754 B = 5656.134943 C = 5783.320199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.076 3.924 4 C 0.001 3.999 5 N -0.450 5.450 6 C 0.062 3.938 7 C -0.075 4.075 8 C -0.084 4.084 9 C -0.096 4.096 10 C -0.014 4.014 11 C -0.521 4.521 12 H 0.071 0.929 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.265 1.265 19 C -0.110 4.110 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.101 0.899 23 H 0.153 0.847 24 H 0.159 0.841 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.012 0.988 30 H 0.017 0.983 31 H 0.263 0.737 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 -3.935 11.243 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.029 3.971 4 C -0.157 4.157 5 N -0.159 5.159 6 C -0.096 4.096 7 C -0.077 4.077 8 C -0.122 4.122 9 C -0.134 4.134 10 C -0.052 4.052 11 C -0.559 4.559 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.136 4.136 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.119 0.881 23 H 0.170 0.830 24 H 0.176 0.824 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.836 -3.377 11.129 20.462 hybrid contribution 0.964 -0.643 0.534 1.276 sum -15.872 -4.020 11.662 20.102 Atomic orbital electron populations 1.23084 0.78296 1.04121 1.01474 1.86080 1.21415 1.26333 1.88728 1.20067 0.93178 0.85550 0.98280 1.22776 1.00203 0.87393 1.05291 1.67497 1.12313 1.26406 1.09670 1.22619 0.88404 0.98988 0.99621 1.21019 0.98389 0.92562 0.95708 1.20819 0.88054 1.03006 1.00355 1.21474 0.98291 1.01523 0.92101 1.19598 0.91356 0.96297 0.97921 1.21159 0.93104 1.50170 0.91466 0.91092 1.25043 0.98429 0.94623 0.95464 1.69920 1.14716 1.50921 1.18818 0.86764 0.80778 0.78383 0.83269 1.20325 1.21425 1.18956 1.20876 0.91398 0.98805 1.02554 0.92568 0.92453 0.88079 0.82980 0.82420 0.90856 0.90571 0.92475 0.92629 0.96997 0.96482 0.92760 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.82 101.05 0.99 1.18 16 2 O -0.31 -3.71 10.51 -19.46 -0.20 -3.92 16 3 C 0.08 1.01 6.71 -39.07 -0.26 0.75 16 4 C 0.00 0.02 10.22 -17.37 -0.18 -0.16 16 5 N -0.45 -6.62 10.35 -13.13 -0.14 -6.75 16 6 C 0.06 0.89 10.85 -17.54 -0.19 0.70 16 7 C -0.07 -1.09 5.15 -104.51 -0.54 -1.63 16 8 C -0.08 -1.29 5.37 -27.88 -0.15 -1.44 16 9 C -0.10 -1.87 5.13 -26.73 -0.14 -2.00 16 10 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 11 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 12 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 13 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 15 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 19 C -0.11 -1.55 9.81 -39.14 -0.38 -1.93 16 20 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 21 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 22 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.15 1.50 6.32 -52.49 -0.33 1.17 16 24 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 25 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 26 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 274.76 15.07 4.14 4.14 Total: -1.00 -32.37 274.76 -5.92 -38.29 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.44 Total: -2.97 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -1.39 Total: -18.45 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.64 Total: -34.12 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.20 Total: -3.92 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.37 -5.92 -38.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250063062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.519 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds