Wall clock time and date at job start Sun Mar 29 2020 22:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 117.00193 * 2 1 4 4 C 1.38751 * 120.47136 * 359.97438 * 3 2 1 5 5 N 1.31808 * 120.67606 * 180.02562 * 4 3 2 6 6 C 1.31879 * 121.78372 * 359.73016 * 5 4 3 7 7 C 1.38210 * 120.88771 * 0.53642 * 6 5 4 8 8 C 1.50703 * 120.38953 * 179.75272 * 7 6 5 9 9 C 1.52996 * 109.46946 * 269.72320 * 8 7 6 10 10 C 1.52997 * 109.46947 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00200 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00139 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47145 * 89.99836 * 15 13 11 17 17 H 1.48496 * 109.47547 * 210.00333 * 15 13 11 18 18 H 1.48499 * 109.47030 * 330.00237 * 15 13 11 19 19 C 1.38579 * 119.22198 * 359.47516 * 7 6 5 20 20 H 1.08997 * 109.46805 * 299.99705 * 1 2 3 21 21 H 1.09004 * 109.47244 * 59.99738 * 1 2 3 22 22 H 1.09001 * 109.47015 * 179.97438 * 1 2 3 23 23 H 1.07993 * 119.65874 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.55521 * 180.26610 * 6 5 4 25 25 H 1.08992 * 109.46894 * 149.72038 * 8 7 6 26 26 H 1.08996 * 109.46805 * 29.72189 * 8 7 6 27 27 H 1.09001 * 109.47372 * 60.00128 * 9 8 7 28 28 H 1.09004 * 109.47108 * 299.99872 * 9 8 7 29 29 H 1.09001 * 109.46832 * 59.99979 * 10 9 8 30 30 H 1.09000 * 109.47611 * 300.00276 * 10 9 8 31 31 H 0.96999 * 120.00061 * 179.97438 * 14 13 11 32 32 H 1.07997 * 120.81359 * 180.22656 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8943 3.5574 -0.0010 6 6 3.2081 3.6720 0.0042 7 6 4.0180 2.5521 -0.0006 8 6 5.5181 2.6962 -0.0001 9 6 6.0263 2.7441 -1.4424 10 6 7.5492 2.8910 -1.4419 11 6 8.0499 2.9376 -2.8626 12 1 7.3516 2.8697 -3.6837 13 6 9.3992 3.0669 -3.1142 14 7 9.8361 3.1081 -4.3539 15 14 10.6070 3.1852 -1.6940 16 1 11.0609 1.8229 -1.3155 17 1 11.7777 4.0004 -2.1062 18 1 9.9423 3.8262 -0.5310 19 6 3.4345 1.2952 0.0000 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2215 2.3268 -0.0005 24 1 3.6571 4.6542 0.0080 25 1 5.9646 1.8454 0.5144 26 1 5.7945 3.6171 0.5133 27 1 5.5797 3.5950 -1.9569 28 1 5.7499 1.8231 -1.9558 29 1 7.9961 2.0404 -0.9273 30 1 7.8253 3.8121 -0.9286 31 1 10.7854 3.1995 -4.5309 32 1 4.0429 0.4028 0.0000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250063062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:41 Heat of formation + Delta-G solvation = -43.832024 kcal Electronic energy + Delta-G solvation = -14130.082901 eV Core-core repulsion = 11668.547431 eV Total energy + Delta-G solvation = -2461.535470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.64721 -39.22511 -36.70046 -34.76807 -33.00960 -31.67482 -29.10265 -28.17751 -25.37483 -24.50633 -22.64541 -21.70970 -19.03836 -18.61416 -18.06447 -17.62324 -16.80579 -16.34903 -15.72355 -15.11187 -15.03480 -14.67956 -14.57979 -14.05387 -13.84678 -13.45214 -13.13679 -12.80878 -12.69687 -12.42988 -12.38852 -11.77079 -11.70565 -11.42653 -11.31373 -10.74234 -10.44433 -10.33779 -9.41536 -8.27427 -6.32106 0.10330 0.26898 1.38982 1.41217 1.53442 2.22565 2.39028 2.75590 3.08369 3.52249 3.65601 3.83739 4.02606 4.15017 4.22904 4.38721 4.41721 4.46838 4.54116 4.74751 4.77803 4.94443 4.96046 5.11707 5.12367 5.32259 5.51148 5.57549 5.65433 5.70280 6.23417 6.30903 6.76648 6.93107 7.32750 8.89835 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050723 B = 0.004949 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.890754 B = 5656.134943 C = 5783.320199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.076 3.924 4 C 0.002 3.998 5 N -0.469 5.469 6 C 0.051 3.949 7 C -0.084 4.084 8 C -0.072 4.072 9 C -0.088 4.088 10 C -0.013 4.013 11 C -0.536 4.536 12 H 0.025 0.975 13 C 0.000 4.000 14 N -0.956 5.956 15 Si 0.955 3.045 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.240 1.240 19 C -0.123 4.123 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.123 0.877 23 H 0.182 0.818 24 H 0.170 0.830 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.023 0.977 30 H 0.027 0.973 31 H 0.266 0.734 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.230 -4.212 13.624 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.028 3.972 4 C -0.156 4.156 5 N -0.178 5.178 6 C -0.107 4.107 7 C -0.086 4.086 8 C -0.109 4.109 9 C -0.126 4.126 10 C -0.050 4.050 11 C -0.574 4.574 12 H 0.044 0.956 13 C -0.196 4.196 14 N -0.597 5.597 15 Si 0.778 3.222 16 H -0.191 1.191 17 H -0.212 1.212 18 H -0.163 1.163 19 C -0.150 4.150 20 H 0.089 0.911 21 H 0.084 0.916 22 H 0.141 0.859 23 H 0.199 0.801 24 H 0.187 0.813 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.551 -3.658 13.521 22.456 hybrid contribution 1.018 -0.627 -0.311 1.235 sum -16.533 -4.285 13.210 21.592 Atomic orbital electron populations 1.23443 0.75902 1.06075 1.02607 1.86072 1.23904 1.25631 1.88405 1.20121 0.93068 0.86319 0.97697 1.23242 1.01591 0.86784 1.03947 1.67541 1.12472 1.27335 1.10418 1.22842 0.88590 0.99544 0.99691 1.20907 0.97859 0.92927 0.96904 1.20633 0.88629 1.04405 0.97265 1.21296 0.95747 1.00448 0.95120 1.19566 0.93956 0.97012 0.94455 1.21565 0.92819 1.49817 0.93202 0.95614 1.26106 1.00788 0.94098 0.98639 1.70090 1.15405 1.52524 1.21661 0.85581 0.77721 0.79064 0.79813 1.19126 1.21211 1.16297 1.21076 0.92291 0.98925 1.02673 0.91091 0.91578 0.85886 0.80145 0.81330 0.89650 0.89025 0.93520 0.93899 0.95856 0.95478 0.92553 0.83515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.82 113.37 1.11 1.28 16 2 O -0.33 -7.13 10.51 -92.55 -0.97 -8.10 16 3 C 0.08 1.88 6.71 22.60 0.15 2.04 16 4 C 0.00 0.05 10.22 84.82 0.87 0.92 16 5 N -0.47 -13.09 10.35 -195.45 -2.02 -15.11 16 6 C 0.05 1.39 10.85 84.68 0.92 2.31 16 7 C -0.08 -2.34 5.15 -19.79 -0.10 -2.44 16 8 C -0.07 -2.05 5.37 29.85 0.16 -1.89 16 9 C -0.09 -3.39 5.13 30.59 0.16 -3.23 16 10 C -0.01 -0.58 4.04 29.85 0.12 -0.45 16 11 C -0.54 -31.40 9.66 25.60 0.25 -31.16 16 12 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 13 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 14 N -0.96 -61.00 13.96 21.44 0.30 -60.70 16 15 Si 0.96 44.07 27.47 68.60 1.88 45.95 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 17 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 18 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 19 C -0.12 -3.33 9.81 22.56 0.22 -3.11 16 20 H 0.07 0.65 7.68 -2.39 -0.02 0.63 16 21 H 0.07 0.68 7.68 -2.39 -0.02 0.66 16 22 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.18 3.05 6.32 -2.91 -0.02 3.03 16 24 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 25 H 0.08 2.24 8.09 -2.39 -0.02 2.22 16 26 H 0.09 2.35 8.09 -2.39 -0.02 2.33 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 30 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 31 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 32 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -70.71 274.76 4.54 -66.17 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.04 Total: 7.08 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 4.32 Total: -35.28 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -1.72 Total: -75.81 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.97 Total: -8.10 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Total: -70.71 4.54 -66.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250063062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.340 kcal (2) G-P(sol) polarization free energy of solvation -70.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds