Wall clock time and date at job start Sun Mar 29 2020 22:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32297 * 120.40508 * 2 1 4 4 C 1.32473 * 120.74202 * 180.24546 * 3 2 1 5 5 N 1.38404 * 119.21484 * 179.75922 * 4 3 2 6 6 N 1.32512 * 121.56607 * 359.77218 * 4 3 2 7 7 C 1.32257 * 120.73807 * 359.97438 * 6 4 3 8 8 C 1.38580 * 120.40018 * 179.76688 * 2 1 3 9 9 C 1.50703 * 120.72063 * 0.02562 * 8 2 1 10 10 C 1.53000 * 109.46912 * 84.72252 * 9 8 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47116 * 59.99479 * 16 14 12 18 18 H 1.48490 * 109.47381 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46756 * 300.00079 * 16 14 12 20 20 H 1.08999 * 109.47248 * 270.23899 * 1 2 3 21 21 H 1.09008 * 109.47166 * 30.23215 * 1 2 3 22 22 H 1.09003 * 109.47269 * 150.23129 * 1 2 3 23 23 H 0.97002 * 119.99926 * 180.02562 * 5 4 3 24 24 H 0.97003 * 120.00215 * 0.02562 * 5 4 3 25 25 H 1.08003 * 120.39904 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47152 * 324.72024 * 9 8 2 27 27 H 1.09001 * 109.46980 * 204.72124 * 9 8 2 28 28 H 1.09001 * 109.47194 * 299.99742 * 10 9 8 29 29 H 1.08992 * 109.47399 * 59.99914 * 10 9 8 30 30 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 31 31 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 32 32 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1410 0.0000 4 6 3.5012 1.1488 -0.0049 5 7 4.1696 2.3608 -0.0098 6 7 4.2015 0.0239 -0.0054 7 6 3.5938 -1.1508 -0.0006 8 6 2.2082 -1.1953 0.0049 9 6 1.4804 -2.5149 0.0097 10 6 1.1185 -2.9028 -1.4254 11 6 0.3790 -4.2423 -1.4205 12 6 0.0219 -4.6242 -2.8338 13 1 0.2948 -3.9761 -3.6537 14 6 -0.6531 -5.8008 -3.0805 15 7 -0.9848 -6.5902 -2.0822 16 14 -1.0950 -6.2746 -4.8325 17 1 0.1452 -6.3963 -5.6403 18 1 -1.8128 -7.5745 -4.8278 19 1 -1.9693 -5.2291 -5.4224 20 1 -0.3634 0.0043 1.0276 21 1 -0.3634 0.8880 -0.5175 22 1 -0.3634 -0.8921 -0.5102 23 1 5.1395 2.3797 -0.0138 24 1 3.6683 3.1912 -0.0093 25 1 4.1700 -2.0643 -0.0014 26 1 0.5701 -2.4256 0.6025 27 1 2.1222 -3.2822 0.4426 28 1 0.4767 -2.1355 -1.8584 29 1 2.0287 -2.9921 -2.0182 30 1 1.0204 -5.0098 -0.9874 31 1 -0.5314 -4.1526 -0.8277 32 1 -1.4594 -7.4182 -2.2558 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250064967.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:57 Heat of formation + Delta-G solvation = 23.855851 kcal Electronic energy + Delta-G solvation = -14328.119685 eV Core-core repulsion = 11901.812133 eV Total energy + Delta-G solvation = -2426.307553 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87336 -36.10969 -34.11686 -33.92884 -32.44547 -30.24297 -28.62101 -26.43951 -23.88484 -22.85583 -21.57309 -20.07942 -18.20252 -17.24627 -16.27289 -15.68561 -15.11693 -14.56724 -14.29205 -13.98242 -13.83717 -13.03226 -12.81563 -12.37493 -12.11348 -12.04278 -11.30189 -10.98337 -10.94124 -10.78433 -10.49675 -10.39760 -10.17588 -9.68718 -9.31038 -9.08922 -8.92658 -8.33020 -7.94722 -5.98537 -4.00697 1.31263 1.40403 3.20615 3.34410 3.38801 3.41527 4.03659 4.29989 4.47514 4.78882 5.04127 5.22037 5.36932 5.37345 5.67786 5.71992 5.80676 6.07366 6.08616 6.20737 6.30947 6.59195 6.75937 6.88892 7.03756 7.13514 7.25834 7.46452 7.69270 7.83637 8.01872 8.44814 8.49864 9.06340 9.63392 11.12629 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050065 B = 0.005169 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.138245 B = 5415.996901 C = 5455.902400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.217 3.783 3 N -0.573 5.573 4 C 0.551 3.449 5 N -0.830 5.830 6 N -0.576 5.576 7 C 0.188 3.812 8 C -0.228 4.228 9 C -0.067 4.067 10 C -0.105 4.105 11 C 0.021 3.979 12 C -0.521 4.521 13 H 0.053 0.947 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.094 0.906 23 H 0.411 0.589 24 H 0.410 0.590 25 H 0.167 0.833 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.676 13.790 5.601 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 N -0.297 5.297 4 C 0.192 3.808 5 N -0.379 5.379 6 N -0.299 5.299 7 C 0.022 3.978 8 C -0.235 4.235 9 C -0.106 4.106 10 C -0.143 4.143 11 C -0.016 4.016 12 C -0.559 4.559 13 H 0.071 0.929 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.101 0.899 21 H 0.096 0.904 22 H 0.113 0.887 23 H 0.241 0.759 24 H 0.241 0.759 25 H 0.184 0.816 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.060 14.477 5.640 17.065 hybrid contribution -0.395 -0.758 -0.995 1.312 sum 6.665 13.719 4.644 15.943 Atomic orbital electron populations 1.20899 0.87957 1.04639 1.03494 1.21294 0.96999 0.86776 0.87904 1.67660 1.07505 1.31331 1.23154 1.19267 0.85379 0.86817 0.89308 1.41602 1.09379 1.03591 1.83351 1.67846 1.41014 0.98130 1.22873 1.22856 0.91647 0.94684 0.88605 1.21434 0.95745 0.98020 1.08273 1.20543 0.99189 0.90881 0.99950 1.21671 0.99978 1.00061 0.92558 1.19113 0.95106 0.90461 0.96918 1.21230 1.36306 1.05277 0.93105 0.92855 1.25009 0.95950 0.96524 0.96879 1.69953 1.40383 1.12474 1.30726 0.86686 0.78606 0.77671 0.85209 1.20282 1.21296 1.20271 0.89904 0.90415 0.88702 0.75885 0.75921 0.81613 0.91062 0.91197 0.93320 0.93410 0.96529 0.96511 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.48 36.00 0.34 -1.11 16 2 C 0.22 3.32 6.82 -82.27 -0.56 2.76 16 3 N -0.57 -8.88 10.40 -10.16 -0.11 -8.98 16 4 C 0.55 8.11 8.67 -322.81 -2.80 5.31 16 5 N -0.83 -8.59 9.07 29.76 0.27 -8.32 16 6 N -0.58 -8.81 10.46 -13.93 -0.15 -8.96 16 7 C 0.19 2.79 10.98 -17.23 -0.19 2.60 16 8 C -0.23 -3.51 5.17 -104.35 -0.54 -4.05 16 9 C -0.07 -1.08 4.68 -27.88 -0.13 -1.21 16 10 C -0.11 -2.09 4.97 -26.73 -0.13 -2.22 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 22 H 0.09 1.30 5.59 -51.93 -0.29 1.01 16 23 H 0.41 3.42 8.94 -40.82 -0.37 3.06 16 24 H 0.41 3.43 8.94 -40.82 -0.37 3.07 16 25 H 0.17 2.06 8.06 -52.48 -0.42 1.64 16 26 H 0.07 1.10 7.11 -51.93 -0.37 0.73 16 27 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 28 H 0.05 0.96 6.94 -51.93 -0.36 0.60 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 274.80 15.07 4.14 4.14 Total: -1.00 -32.00 274.80 -8.93 -40.93 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.25 Total: 1.49 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -4.56 Total: -10.94 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.75 Total: -52.22 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.00 -8.93 -40.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250064967.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.790 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds