Wall clock time and date at job start Sun Mar 29 2020 22:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32297 * 120.40508 * 2 1 4 4 C 1.32473 * 120.74202 * 180.24546 * 3 2 1 5 5 N 1.38404 * 119.21484 * 179.75922 * 4 3 2 6 6 N 1.32512 * 121.56607 * 359.77218 * 4 3 2 7 7 C 1.32257 * 120.73807 * 359.97438 * 6 4 3 8 8 C 1.38580 * 120.40018 * 179.76688 * 2 1 3 9 9 C 1.50703 * 120.72063 * 0.02562 * 8 2 1 10 10 C 1.53000 * 109.46912 * 84.72252 * 9 8 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47116 * 59.99479 * 16 14 12 18 18 H 1.48490 * 109.47381 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46756 * 300.00079 * 16 14 12 20 20 H 1.08999 * 109.47248 * 270.23899 * 1 2 3 21 21 H 1.09008 * 109.47166 * 30.23215 * 1 2 3 22 22 H 1.09003 * 109.47269 * 150.23129 * 1 2 3 23 23 H 0.97002 * 119.99926 * 180.02562 * 5 4 3 24 24 H 0.97003 * 120.00215 * 0.02562 * 5 4 3 25 25 H 1.08003 * 120.39904 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47152 * 324.72024 * 9 8 2 27 27 H 1.09001 * 109.46980 * 204.72124 * 9 8 2 28 28 H 1.09001 * 109.47194 * 299.99742 * 10 9 8 29 29 H 1.08992 * 109.47399 * 59.99914 * 10 9 8 30 30 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 31 31 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 32 32 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1410 0.0000 4 6 3.5012 1.1488 -0.0049 5 7 4.1696 2.3608 -0.0098 6 7 4.2015 0.0239 -0.0054 7 6 3.5938 -1.1508 -0.0006 8 6 2.2082 -1.1953 0.0049 9 6 1.4804 -2.5149 0.0097 10 6 1.1185 -2.9028 -1.4254 11 6 0.3790 -4.2423 -1.4205 12 6 0.0219 -4.6242 -2.8338 13 1 0.2948 -3.9761 -3.6537 14 6 -0.6531 -5.8008 -3.0805 15 7 -0.9848 -6.5902 -2.0822 16 14 -1.0950 -6.2746 -4.8325 17 1 0.1452 -6.3963 -5.6403 18 1 -1.8128 -7.5745 -4.8278 19 1 -1.9693 -5.2291 -5.4224 20 1 -0.3634 0.0043 1.0276 21 1 -0.3634 0.8880 -0.5175 22 1 -0.3634 -0.8921 -0.5102 23 1 5.1395 2.3797 -0.0138 24 1 3.6683 3.1912 -0.0093 25 1 4.1700 -2.0643 -0.0014 26 1 0.5701 -2.4256 0.6025 27 1 2.1222 -3.2822 0.4426 28 1 0.4767 -2.1355 -1.8584 29 1 2.0287 -2.9921 -2.0182 30 1 1.0204 -5.0098 -0.9874 31 1 -0.5314 -4.1526 -0.8277 32 1 -1.4594 -7.4182 -2.2558 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250064967.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:57 Heat of formation + Delta-G solvation = 4.542264 kcal Electronic energy + Delta-G solvation = -14328.957185 eV Core-core repulsion = 11901.812133 eV Total energy + Delta-G solvation = -2427.145053 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.98907 -37.37688 -35.69029 -35.04220 -34.17311 -31.72993 -29.82837 -28.04844 -25.46756 -24.08128 -22.95307 -21.72087 -19.27735 -18.42280 -18.25991 -16.66552 -16.56383 -16.18920 -15.60210 -15.50799 -15.00582 -14.29805 -14.05416 -13.99034 -13.81459 -13.25575 -12.93489 -12.62602 -12.57850 -12.53315 -12.06093 -11.67949 -11.43084 -11.30981 -11.21996 -10.98417 -10.49717 -10.06826 -9.04784 -8.15653 -6.25838 0.18113 0.26200 1.42206 1.44250 1.52257 2.25194 2.43993 2.90114 3.17442 3.22325 3.72140 3.95776 4.04055 4.18051 4.52346 4.60819 4.63705 4.74625 4.89197 4.90168 5.14320 5.27680 5.28770 5.31118 5.50247 5.60865 5.84523 5.93658 5.99181 6.31565 6.41018 6.42541 6.91316 7.42959 7.46400 8.95362 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050065 B = 0.005169 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.138245 B = 5415.996901 C = 5455.902400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.211 3.789 3 N -0.586 5.586 4 C 0.540 3.460 5 N -0.810 5.810 6 N -0.589 5.589 7 C 0.187 3.813 8 C -0.243 4.243 9 C -0.053 4.053 10 C -0.090 4.090 11 C 0.024 3.976 12 C -0.544 4.544 13 H 0.055 0.945 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.958 3.042 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.268 1.268 20 H 0.100 0.900 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.421 0.579 24 H 0.421 0.579 25 H 0.186 0.814 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.043 0.957 30 H -0.005 1.005 31 H -0.002 1.002 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 14.801 5.099 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.064 3.936 3 N -0.311 5.311 4 C 0.181 3.819 5 N -0.361 5.361 6 N -0.313 5.313 7 C 0.021 3.979 8 C -0.250 4.250 9 C -0.091 4.091 10 C -0.128 4.128 11 C -0.013 4.013 12 C -0.582 4.582 13 H 0.073 0.927 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.783 3.217 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.193 1.193 20 H 0.119 0.881 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.254 0.746 24 H 0.253 0.747 25 H 0.203 0.797 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.014 0.986 31 H 0.017 0.983 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.473 15.537 5.138 17.990 hybrid contribution -0.475 -1.008 -0.809 1.377 sum 6.999 14.529 4.329 16.698 Atomic orbital electron populations 1.20919 0.86706 1.04463 1.04605 1.21650 0.98014 0.86820 0.87136 1.67742 1.07880 1.31294 1.24176 1.19703 0.85572 0.87854 0.88773 1.41620 1.10040 1.02790 1.81666 1.67935 1.41096 0.98417 1.23808 1.23220 0.91744 0.95428 0.87510 1.21292 0.96023 0.97441 1.10254 1.20311 0.99780 0.91720 0.97327 1.21432 0.98959 0.97108 0.95266 1.19025 0.94428 0.92657 0.95173 1.21692 1.36362 1.05607 0.94498 0.92715 1.25892 0.95827 0.96521 1.01254 1.70076 1.41129 1.12943 1.33000 0.85605 0.78600 0.77530 0.79944 1.19466 1.20794 1.19317 0.88119 0.89603 0.89722 0.74621 0.74680 0.79730 0.90495 0.90560 0.93289 0.93819 0.98647 0.98341 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 9.48 71.23 0.68 -2.02 16 2 C 0.21 6.17 6.82 42.57 0.29 6.46 16 3 N -0.59 -17.27 10.40 -186.05 -1.93 -19.20 16 4 C 0.54 14.98 8.67 261.49 2.27 17.25 16 5 N -0.81 -15.10 9.07 -59.75 -0.54 -15.65 16 6 N -0.59 -17.10 10.46 -197.98 -2.07 -19.17 16 7 C 0.19 5.29 10.98 84.72 0.93 6.22 16 8 C -0.24 -7.20 5.17 -19.69 -0.10 -7.31 16 9 C -0.05 -1.67 4.68 29.85 0.14 -1.53 16 10 C -0.09 -3.56 4.97 30.59 0.15 -3.41 16 11 C 0.02 1.24 4.97 29.85 0.15 1.39 16 12 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 13 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 14 C 0.00 0.17 5.46 84.65 0.46 0.63 16 15 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 16 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 21 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 22 H 0.08 2.25 5.59 -2.39 -0.01 2.24 16 23 H 0.42 6.10 8.94 -92.71 -0.83 5.27 16 24 H 0.42 6.12 8.94 -92.71 -0.83 5.29 16 25 H 0.19 4.30 8.06 -2.91 -0.02 4.28 16 26 H 0.08 2.33 7.11 -2.39 -0.02 2.31 16 27 H 0.08 2.29 8.07 -2.39 -0.02 2.27 16 28 H 0.05 1.92 6.94 -2.39 -0.02 1.90 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -67.34 274.80 2.45 -64.89 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -0.52 Total: 11.54 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 5.20 Total: -12.80 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -4.26 Total: -109.77 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -67.34 2.45 -64.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250064967.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.435 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds