Wall clock time and date at job start Sun Mar 29 2020 21:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99627 * 2 1 4 4 H 1.48502 * 109.46974 * 240.00387 * 3 2 1 5 5 H 1.48495 * 109.47457 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47195 * 120.00423 * 3 2 1 7 7 C 1.37872 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00454 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47393 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47449 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47066 * 179.97438 * 11 10 9 13 13 C 1.38681 * 120.41820 * 90.00001 * 12 11 10 14 14 C 1.38624 * 118.41857 * 180.02562 * 13 12 11 15 15 C 1.38221 * 119.16413 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.62133 * 179.97438 * 15 14 13 17 17 O 1.42906 * 109.46702 * 0.02562 * 16 15 14 18 18 N 1.31854 * 120.76270 * 0.26148 * 15 14 13 19 19 C 1.31881 * 121.72562 * 359.47113 * 18 15 14 20 20 H 0.97001 * 120.00426 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47382 * 59.99945 * 9 7 2 22 22 H 1.09003 * 109.47259 * 300.00076 * 9 7 2 23 23 H 1.09002 * 109.47319 * 59.99695 * 10 9 7 24 24 H 1.08998 * 109.47149 * 299.99817 * 10 9 7 25 25 H 1.08997 * 109.46727 * 59.99697 * 11 10 9 26 26 H 1.09007 * 109.46591 * 299.99705 * 11 10 9 27 27 H 1.07999 * 120.78900 * 359.97438 * 13 12 11 28 28 H 1.08001 * 120.41894 * 180.02562 * 14 13 12 29 29 H 1.09000 * 109.47318 * 119.99621 * 16 15 14 30 30 H 1.09000 * 109.47161 * 240.00251 * 16 15 14 31 31 H 0.96698 * 113.99410 * 179.97438 * 17 16 15 32 32 H 1.08004 * 119.62105 * 180.26969 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4805 -4.9871 -0.0046 12 6 2.4598 -6.1324 -0.0062 13 6 2.9162 -6.6678 1.1889 14 6 3.8170 -7.7203 1.1390 15 6 4.2270 -8.1982 -0.0914 16 6 5.2064 -9.3417 -0.1577 17 8 5.5535 -9.7488 1.1674 18 7 3.7755 -7.6615 -1.2079 19 6 2.9142 -6.6628 -1.1985 20 1 -0.4851 0.8400 0.0004 21 1 0.6248 -2.5563 -0.8919 22 1 0.6241 -2.5575 0.8880 23 1 2.8721 -3.6050 0.8873 24 1 2.8720 -3.6035 -0.8927 25 1 0.8541 -5.0437 -0.8948 26 1 0.8535 -5.0459 0.8852 27 1 2.5785 -6.2735 2.1360 28 1 4.1930 -8.1619 2.0501 29 1 4.7521 -10.1790 -0.6873 30 1 6.1040 -9.0211 -0.6866 31 1 6.1818 -10.4831 1.2013 32 1 2.5633 -6.2517 -2.1336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065404.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:26 Heat of formation + Delta-G solvation = -40.539338 kcal Electronic energy + Delta-G solvation = -13969.375477 eV Core-core repulsion = 11507.982788 eV Total energy + Delta-G solvation = -2461.392689 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.21965 -37.10036 -35.07914 -32.97828 -31.87528 -30.90148 -27.97731 -25.60024 -23.59088 -23.06719 -21.15275 -20.05871 -17.76668 -16.65237 -16.21417 -15.82900 -15.36901 -14.82259 -14.44498 -13.84384 -13.78124 -13.47362 -12.97017 -12.41259 -12.14550 -11.90397 -11.56778 -11.20614 -10.81125 -10.77910 -10.51579 -10.48920 -9.73320 -9.66678 -9.43352 -9.23052 -9.10671 -8.47035 -8.33847 -5.99125 -4.01542 1.23546 1.42675 3.34205 3.38363 3.41182 3.65344 3.86901 4.46933 4.68049 4.87902 5.00757 5.13134 5.23376 5.25246 5.31252 5.36638 5.66808 5.82085 5.97216 6.03215 6.22034 6.32511 6.42870 6.76483 6.86034 6.86394 7.11779 7.31809 7.67906 7.82217 8.00832 8.05160 8.43722 9.05370 9.62538 11.12126 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057219 B = 0.004459 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.230444 B = 6277.601425 C = 6408.987100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.103 4.103 11 C -0.081 4.081 12 C -0.113 4.113 13 C -0.080 4.080 14 C -0.145 4.145 15 C 0.097 3.903 16 C 0.134 3.866 17 O -0.570 6.570 18 N -0.483 5.483 19 C 0.099 3.901 20 H 0.261 0.739 21 H 0.017 0.983 22 H 0.016 0.984 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.385 0.615 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 -17.705 0.848 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.119 4.119 12 C -0.115 4.115 13 C -0.106 4.106 14 C -0.165 4.165 15 C -0.040 4.040 16 C 0.056 3.944 17 O -0.376 6.376 18 N -0.193 5.193 19 C -0.058 4.058 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.152 0.848 28 H 0.157 0.843 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.233 0.767 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.444 -17.446 0.209 18.969 hybrid contribution 0.524 0.920 0.641 1.237 sum 7.968 -16.526 0.850 18.366 Atomic orbital electron populations 1.69952 1.06043 1.26703 1.50870 1.25017 0.94845 0.99224 0.95329 0.86664 0.79596 0.83151 0.78635 1.20232 1.21270 1.20261 1.21228 0.93014 0.91140 1.50605 0.92796 1.19117 0.93971 0.91243 0.97293 1.21644 0.99037 0.92850 1.00562 1.20760 0.95900 0.92333 1.02936 1.21237 0.98805 0.97622 0.93843 1.21597 0.95559 0.94818 0.98659 1.21842 0.98013 0.97224 0.99417 1.20718 0.97281 0.96734 0.89295 1.20507 0.96062 0.94120 0.83752 1.86401 1.67477 1.56388 1.27321 1.67170 1.10916 1.10512 1.30659 1.22589 0.93181 0.91997 0.98024 0.92951 0.96489 0.96546 0.93344 0.93238 0.90925 0.91089 0.84753 0.84281 0.91646 0.91565 0.76713 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.12 5.14 -26.73 -0.14 -2.26 16 11 C -0.08 -1.36 5.37 -27.88 -0.15 -1.51 16 12 C -0.11 -1.75 5.15 -104.48 -0.54 -2.29 16 13 C -0.08 -1.16 9.86 -39.28 -0.39 -1.55 16 14 C -0.15 -2.00 9.41 -39.45 -0.37 -2.37 16 15 C 0.10 1.35 6.78 -82.59 -0.56 0.79 16 16 C 0.13 1.35 7.59 36.01 0.27 1.62 16 17 O -0.57 -5.11 12.11 -35.23 -0.43 -5.54 16 18 N -0.48 -7.36 10.27 -9.47 -0.10 -7.46 16 19 C 0.10 1.51 10.86 -17.55 -0.19 1.32 16 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 26 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 27 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.14 1.74 7.00 -52.49 -0.37 1.37 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.39 1.41 9.12 45.56 0.42 1.83 16 32 H 0.16 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 279.56 15.07 4.21 4.21 Total: -1.00 -32.58 279.56 -6.92 -39.50 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -3.72 Total: -1.65 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.61 Total: -19.55 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.64 Total: -33.79 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.43 Total: -5.54 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.58 -6.92 -39.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065404.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.042 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds