Wall clock time and date at job start Sun Mar 29 2020 21:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99627 * 2 1 4 4 H 1.48502 * 109.46974 * 240.00387 * 3 2 1 5 5 H 1.48495 * 109.47457 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47195 * 120.00423 * 3 2 1 7 7 C 1.37872 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00454 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47393 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47449 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47066 * 179.97438 * 11 10 9 13 13 C 1.38681 * 120.41820 * 90.00001 * 12 11 10 14 14 C 1.38624 * 118.41857 * 180.02562 * 13 12 11 15 15 C 1.38221 * 119.16413 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.62133 * 179.97438 * 15 14 13 17 17 O 1.42906 * 109.46702 * 0.02562 * 16 15 14 18 18 N 1.31854 * 120.76270 * 0.26148 * 15 14 13 19 19 C 1.31881 * 121.72562 * 359.47113 * 18 15 14 20 20 H 0.97001 * 120.00426 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47382 * 59.99945 * 9 7 2 22 22 H 1.09003 * 109.47259 * 300.00076 * 9 7 2 23 23 H 1.09002 * 109.47319 * 59.99695 * 10 9 7 24 24 H 1.08998 * 109.47149 * 299.99817 * 10 9 7 25 25 H 1.08997 * 109.46727 * 59.99697 * 11 10 9 26 26 H 1.09007 * 109.46591 * 299.99705 * 11 10 9 27 27 H 1.07999 * 120.78900 * 359.97438 * 13 12 11 28 28 H 1.08001 * 120.41894 * 180.02562 * 14 13 12 29 29 H 1.09000 * 109.47318 * 119.99621 * 16 15 14 30 30 H 1.09000 * 109.47161 * 240.00251 * 16 15 14 31 31 H 0.96698 * 113.99410 * 179.97438 * 17 16 15 32 32 H 1.08004 * 119.62105 * 180.26969 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4805 -4.9871 -0.0046 12 6 2.4598 -6.1324 -0.0062 13 6 2.9162 -6.6678 1.1889 14 6 3.8170 -7.7203 1.1390 15 6 4.2270 -8.1982 -0.0914 16 6 5.2064 -9.3417 -0.1577 17 8 5.5535 -9.7488 1.1674 18 7 3.7755 -7.6615 -1.2079 19 6 2.9142 -6.6628 -1.1985 20 1 -0.4851 0.8400 0.0004 21 1 0.6248 -2.5563 -0.8919 22 1 0.6241 -2.5575 0.8880 23 1 2.8721 -3.6050 0.8873 24 1 2.8720 -3.6035 -0.8927 25 1 0.8541 -5.0437 -0.8948 26 1 0.8535 -5.0459 0.8852 27 1 2.5785 -6.2735 2.1360 28 1 4.1930 -8.1619 2.0501 29 1 4.7521 -10.1790 -0.6873 30 1 6.1040 -9.0211 -0.6866 31 1 6.1818 -10.4831 1.2013 32 1 2.5633 -6.2517 -2.1336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065404.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:25 Heat of formation + Delta-G solvation = -62.672087 kcal Electronic energy + Delta-G solvation = -13970.335225 eV Core-core repulsion = 11507.982788 eV Total energy + Delta-G solvation = -2462.352437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.30910 -37.87114 -36.62480 -34.81834 -33.10378 -32.36426 -29.43928 -27.05220 -25.00222 -24.36566 -22.54124 -21.66478 -18.55839 -18.47047 -17.56942 -16.87744 -16.57092 -16.16560 -15.90445 -15.43895 -14.88933 -14.64178 -14.26795 -14.03159 -13.78116 -13.21604 -13.00358 -12.68915 -12.56618 -12.50855 -12.29804 -11.51500 -11.38512 -11.31280 -11.12416 -10.68317 -10.54335 -10.40589 -9.64241 -8.19782 -6.30893 0.12318 0.31415 1.39801 1.42565 1.50637 2.41056 2.76355 2.87309 3.13114 3.79165 3.83428 3.92419 4.04421 4.20171 4.27834 4.50066 4.51533 4.54851 4.67177 4.78664 4.92363 5.01732 5.12194 5.23275 5.24755 5.42952 5.52669 5.74655 5.77918 5.87119 6.26099 6.85843 6.90688 6.95707 7.38245 8.91576 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057219 B = 0.004459 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.230444 B = 6277.601425 C = 6408.987100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.089 4.089 11 C -0.069 4.069 12 C -0.129 4.129 13 C -0.083 4.083 14 C -0.150 4.150 15 C 0.090 3.910 16 C 0.138 3.862 17 O -0.583 6.583 18 N -0.498 5.498 19 C 0.091 3.909 20 H 0.264 0.736 21 H -0.004 1.004 22 H -0.005 1.005 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.408 0.592 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 -18.395 1.072 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.127 4.127 11 C -0.107 4.107 12 C -0.130 4.130 13 C -0.109 4.109 14 C -0.170 4.170 15 C -0.048 4.048 16 C 0.060 3.940 17 O -0.392 6.392 18 N -0.208 5.208 19 C -0.065 4.065 20 H 0.073 0.927 21 H 0.014 0.986 22 H 0.013 0.987 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.165 0.835 28 H 0.171 0.829 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.260 0.740 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.952 -18.165 0.435 20.256 hybrid contribution 0.082 1.051 0.598 1.212 sum 9.034 -17.114 1.033 19.380 Atomic orbital electron populations 1.70079 1.07707 1.27848 1.51609 1.25950 0.95772 1.03246 0.94713 0.85538 0.78338 0.78269 0.79140 1.19260 1.20660 1.19266 1.21689 0.93453 0.92648 1.50689 0.92551 1.19033 0.94414 0.92776 0.95165 1.21404 0.97900 0.93034 1.00340 1.20534 0.95864 0.90884 1.03392 1.21061 0.99470 0.97916 0.94593 1.21830 0.95356 0.94854 0.98860 1.22039 0.97820 0.97020 1.00116 1.21420 0.97161 0.97219 0.88971 1.20497 0.95668 0.93313 0.84539 1.86339 1.68485 1.57754 1.26657 1.67256 1.11350 1.10813 1.31369 1.22806 0.93181 0.92125 0.98414 0.92722 0.98573 0.98658 0.93497 0.93385 0.90487 0.90743 0.83508 0.82917 0.90082 0.90417 0.74001 0.81572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.55 -31.60 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.09 -3.68 5.14 30.59 0.16 -3.53 16 11 C -0.07 -2.28 5.37 29.85 0.16 -2.12 16 12 C -0.13 -3.87 5.15 -19.77 -0.10 -3.97 16 13 C -0.08 -2.29 9.86 22.47 0.22 -2.07 16 14 C -0.15 -3.88 9.41 22.36 0.21 -3.67 16 15 C 0.09 2.33 6.78 42.55 0.29 2.62 16 16 C 0.14 2.42 7.59 71.24 0.54 2.96 16 17 O -0.58 -8.81 12.11 -148.98 -1.80 -10.61 16 18 N -0.50 -14.51 10.27 -183.89 -1.89 -16.40 16 19 C 0.09 2.70 10.86 84.67 0.92 3.62 16 20 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 21 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 22 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 23 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.08 2.46 8.09 -2.39 -0.02 2.44 16 26 H 0.07 2.40 8.10 -2.38 -0.02 2.38 16 27 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 28 H 0.15 3.47 7.00 -2.91 -0.02 3.45 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.41 1.76 9.12 -74.06 -0.68 1.08 16 32 H 0.17 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -69.04 279.56 2.29 -66.75 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 0.43 Total: 5.97 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 3.24 Total: -35.64 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.60 Total: -73.14 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.80 Total: -10.61 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -69.04 2.29 -66.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065404.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.083 kcal (2) G-P(sol) polarization free energy of solvation -69.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds