Wall clock time and date at job start Sun Mar 29 2020 22:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.35762 * 119.62659 * 2 1 4 4 C 1.35348 * 120.70055 * 180.26144 * 3 2 1 5 5 C 1.50697 * 120.02428 * 179.74588 * 4 3 2 6 6 C 1.52997 * 109.47466 * 94.72261 * 5 4 3 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99776 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00001 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99923 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00006 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.46794 * 89.99626 * 12 10 8 14 14 H 1.48502 * 109.47140 * 209.99610 * 12 10 8 15 15 H 1.48501 * 109.46982 * 329.99723 * 12 10 8 16 16 C 1.40197 * 119.94791 * 359.46481 * 4 3 2 17 17 C 1.36397 * 119.26327 * 0.25967 * 16 4 3 18 18 C 1.34661 * 119.62058 * 179.70334 * 2 1 3 19 19 O 1.22063 * 119.98625 * 0.02609 * 18 2 1 20 20 H 1.08993 * 109.47092 * 180.29748 * 1 2 3 21 21 H 1.08999 * 109.46331 * 300.29789 * 1 2 3 22 22 H 1.09000 * 109.46853 * 60.29407 * 1 2 3 23 23 H 1.07999 * 119.65047 * 359.97438 * 3 2 1 24 24 H 1.09002 * 109.47120 * 334.72013 * 5 4 3 25 25 H 1.08998 * 109.46862 * 214.72816 * 5 4 3 26 26 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 27 27 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 28 28 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 29 29 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 30 30 H 0.97000 * 119.99684 * 179.97438 * 11 10 8 31 31 H 1.07997 * 120.36524 * 180.27272 * 16 4 3 32 32 H 1.08001 * 120.34633 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1362 1.1801 0.0000 4 6 3.4895 1.2055 -0.0053 5 6 4.2189 2.5242 -0.0110 6 6 4.5753 2.9161 1.4243 7 6 5.3153 4.2553 1.4185 8 6 5.6658 4.6417 2.8323 9 1 5.3888 3.9964 3.6529 10 6 6.3410 5.8184 3.0782 11 7 6.6463 6.1558 4.3121 12 14 6.8206 6.9341 1.6588 13 1 5.7271 7.9052 1.4012 14 1 8.0638 7.6689 2.0050 15 1 7.0522 6.1151 0.4419 16 6 4.2120 0.0041 0.0005 17 6 3.5360 -1.1805 0.0060 18 6 2.1307 -1.1706 0.0061 19 8 1.5131 -2.2235 0.0110 20 1 -0.3633 -1.0276 0.0053 21 1 -0.3632 0.5185 0.8873 22 1 -0.3633 0.5093 -0.8926 23 1 1.5845 2.1085 -0.0004 24 1 3.5799 3.2909 -0.4491 25 1 5.1315 2.4319 -0.5998 26 1 5.2143 2.1494 1.8624 27 1 3.6626 3.0084 2.0130 28 1 6.2280 4.1635 0.8297 29 1 4.6760 5.0218 0.9806 30 1 7.1217 6.9835 4.4850 31 1 5.2919 0.0165 0.0007 32 1 4.0750 -2.1164 0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:00 Heat of formation + Delta-G solvation = -20.977394 kcal Electronic energy + Delta-G solvation = -14264.794119 eV Core-core repulsion = 11804.249700 eV Total energy + Delta-G solvation = -2460.544419 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28205 -37.31722 -35.45071 -33.94282 -32.24899 -30.17764 -28.10438 -26.68878 -23.98351 -23.21699 -21.52074 -20.10753 -17.52337 -17.13909 -16.66606 -16.09172 -16.00113 -14.54522 -14.22778 -14.08503 -13.84140 -13.38023 -13.00172 -12.77223 -12.40821 -12.36707 -11.93130 -11.48917 -11.47084 -10.92144 -10.77105 -10.09613 -9.96420 -9.93138 -9.75423 -9.59750 -9.20496 -8.55686 -7.80440 -6.05838 -4.04055 0.84145 1.89182 2.63514 3.28464 3.36430 3.39223 3.64431 4.43226 4.57745 4.59285 4.90948 5.03988 5.14388 5.16392 5.28042 5.30504 5.44698 5.63391 5.85602 5.99518 6.04525 6.16579 6.29867 6.55624 6.60497 6.64556 6.87713 7.05045 7.28642 7.40828 7.78114 8.01779 8.52691 8.99611 9.56650 11.07790 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.053878 B = 0.005047 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.571634 B = 5546.814856 C = 5598.991779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.499 5.499 3 C 0.120 3.880 4 C -0.176 4.176 5 C -0.069 4.069 6 C -0.098 4.098 7 C -0.015 4.015 8 C -0.521 4.521 9 H 0.071 0.929 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.265 1.265 16 C -0.003 4.003 17 C -0.250 4.250 18 C 0.510 3.490 19 O -0.568 6.568 20 H 0.100 0.900 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.162 0.838 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.016 0.984 29 H 0.011 0.989 30 H 0.263 0.737 31 H 0.136 0.864 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.980 -8.665 -11.202 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.209 5.209 3 C -0.006 4.006 4 C -0.181 4.181 5 C -0.107 4.107 6 C -0.136 4.136 7 C -0.053 4.053 8 C -0.559 4.559 9 H 0.089 0.911 10 C -0.136 4.136 11 N -0.544 5.544 12 Si 0.708 3.292 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.190 1.190 16 C -0.025 4.025 17 C -0.272 4.272 18 C 0.313 3.687 19 O -0.453 6.453 20 H 0.119 0.881 21 H 0.097 0.903 22 H 0.095 0.905 23 H 0.179 0.821 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.347 -9.200 -11.093 17.178 hybrid contribution 0.368 0.842 -0.511 1.052 sum -8.979 -8.358 -11.604 16.886 Atomic orbital electron populations 1.22161 0.77617 1.05940 1.03064 1.45283 1.09085 1.06874 1.59690 1.21772 0.93365 0.89191 0.96273 1.19588 0.92153 0.97139 1.09209 1.20579 0.99188 0.91081 0.99822 1.21499 1.00263 0.99061 0.92768 1.19600 0.95235 0.92584 0.97844 1.21170 1.36535 1.06279 0.91957 0.91122 1.25053 0.95387 0.97703 0.95439 1.69920 1.41039 1.24229 1.19185 0.86767 0.78131 0.80944 0.83354 1.20345 1.21441 1.18971 1.21492 1.01017 0.91346 0.88599 1.22068 0.92653 0.99935 1.12504 1.17164 0.89438 0.82716 0.79374 1.90913 1.70032 1.29688 1.54640 0.88118 0.90327 0.90480 0.82103 0.91416 0.91020 0.92640 0.92837 0.96589 0.97084 0.92755 0.84571 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.47 10.58 59.85 0.63 1.11 16 2 N -0.50 -6.00 2.99 -127.20 -0.38 -6.38 16 3 C 0.12 1.33 9.96 -16.84 -0.17 1.16 16 4 C -0.18 -2.18 5.11 -104.92 -0.54 -2.72 16 5 C -0.07 -0.93 5.34 -27.89 -0.15 -1.08 16 6 C -0.10 -1.77 5.13 -26.73 -0.14 -1.91 16 7 C -0.02 -0.34 4.04 -27.88 -0.11 -0.46 16 8 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 9 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 10 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 11 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 12 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 16 C 0.00 -0.03 9.79 -39.51 -0.39 -0.42 16 17 C -0.25 -3.29 9.99 -39.38 -0.39 -3.69 16 18 C 0.51 7.58 7.41 -15.45 -0.11 7.46 16 19 O -0.57 -10.13 16.39 4.86 0.08 -10.05 16 20 H 0.10 1.02 6.85 -51.93 -0.36 0.66 16 21 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.16 1.34 8.04 -52.49 -0.42 0.91 16 24 H 0.07 0.84 8.03 -51.93 -0.42 0.42 16 25 H 0.07 0.94 8.12 -51.93 -0.42 0.51 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 29 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 274.83 15.07 4.14 4.14 Total: -1.00 -33.45 274.83 -6.35 -39.81 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.51 Total: -3.48 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -1.79 Total: -13.66 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.39 Total: -33.31 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.45 -6.35 -39.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.831 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds