Wall clock time and date at job start Sun Mar 29 2020 22:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.35762 * 119.62659 * 2 1 4 4 C 1.35348 * 120.70055 * 180.26144 * 3 2 1 5 5 C 1.50697 * 120.02428 * 179.74588 * 4 3 2 6 6 C 1.52997 * 109.47466 * 94.72261 * 5 4 3 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99776 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00001 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99923 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00006 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.46794 * 89.99626 * 12 10 8 14 14 H 1.48502 * 109.47140 * 209.99610 * 12 10 8 15 15 H 1.48501 * 109.46982 * 329.99723 * 12 10 8 16 16 C 1.40197 * 119.94791 * 359.46481 * 4 3 2 17 17 C 1.36397 * 119.26327 * 0.25967 * 16 4 3 18 18 C 1.34661 * 119.62058 * 179.70334 * 2 1 3 19 19 O 1.22063 * 119.98625 * 0.02609 * 18 2 1 20 20 H 1.08993 * 109.47092 * 180.29748 * 1 2 3 21 21 H 1.08999 * 109.46331 * 300.29789 * 1 2 3 22 22 H 1.09000 * 109.46853 * 60.29407 * 1 2 3 23 23 H 1.07999 * 119.65047 * 359.97438 * 3 2 1 24 24 H 1.09002 * 109.47120 * 334.72013 * 5 4 3 25 25 H 1.08998 * 109.46862 * 214.72816 * 5 4 3 26 26 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 27 27 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 28 28 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 29 29 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 30 30 H 0.97000 * 119.99684 * 179.97438 * 11 10 8 31 31 H 1.07997 * 120.36524 * 180.27272 * 16 4 3 32 32 H 1.08001 * 120.34633 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1362 1.1801 0.0000 4 6 3.4895 1.2055 -0.0053 5 6 4.2189 2.5242 -0.0110 6 6 4.5753 2.9161 1.4243 7 6 5.3153 4.2553 1.4185 8 6 5.6658 4.6417 2.8323 9 1 5.3888 3.9964 3.6529 10 6 6.3410 5.8184 3.0782 11 7 6.6463 6.1558 4.3121 12 14 6.8206 6.9341 1.6588 13 1 5.7271 7.9052 1.4012 14 1 8.0638 7.6689 2.0050 15 1 7.0522 6.1151 0.4419 16 6 4.2120 0.0041 0.0005 17 6 3.5360 -1.1805 0.0060 18 6 2.1307 -1.1706 0.0061 19 8 1.5131 -2.2235 0.0110 20 1 -0.3633 -1.0276 0.0053 21 1 -0.3632 0.5185 0.8873 22 1 -0.3633 0.5093 -0.8926 23 1 1.5845 2.1085 -0.0004 24 1 3.5799 3.2909 -0.4491 25 1 5.1315 2.4319 -0.5998 26 1 5.2143 2.1494 1.8624 27 1 3.6626 3.0084 2.0130 28 1 6.2280 4.1635 0.8297 29 1 4.6760 5.0218 0.9806 30 1 7.1217 6.9835 4.4850 31 1 5.2919 0.0165 0.0007 32 1 4.0750 -2.1164 0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:00 Heat of formation + Delta-G solvation = -42.126375 kcal Electronic energy + Delta-G solvation = -14265.711208 eV Core-core repulsion = 11804.249700 eV Total energy + Delta-G solvation = -2461.461508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.27470 -38.43403 -36.64469 -35.40168 -33.99881 -31.57971 -29.10495 -28.01196 -25.28157 -24.34885 -22.76806 -21.64724 -18.87600 -18.47842 -18.04613 -17.06969 -16.96478 -16.27788 -15.64068 -15.19756 -14.99197 -14.76881 -14.24186 -14.02320 -13.64481 -13.49410 -13.15400 -12.97034 -12.85297 -12.31662 -12.17788 -11.71263 -11.40910 -11.30790 -11.24020 -11.05918 -10.87048 -10.70720 -8.83036 -8.24434 -6.28612 -0.08702 0.85264 1.41141 1.43731 1.55569 1.74038 2.41574 2.64549 3.11901 3.68071 3.77490 4.02973 4.17787 4.28648 4.38016 4.44280 4.53914 4.59468 4.77682 4.84818 4.98152 5.09947 5.17484 5.22406 5.27508 5.47110 5.60016 5.68425 5.75539 5.76632 6.06472 6.35453 6.81418 6.96885 7.36476 8.92835 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.053878 B = 0.005047 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.571634 B = 5546.814856 C = 5598.991779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.496 5.496 3 C 0.137 3.863 4 C -0.193 4.193 5 C -0.054 4.054 6 C -0.092 4.092 7 C -0.015 4.015 8 C -0.533 4.533 9 H 0.025 0.975 10 C -0.002 4.002 11 N -0.958 5.958 12 Si 0.955 3.045 13 H -0.265 1.265 14 H -0.290 1.290 15 H -0.239 1.239 16 C 0.006 3.994 17 C -0.272 4.272 18 C 0.493 3.507 19 O -0.612 6.612 20 H 0.082 0.918 21 H 0.100 0.900 22 H 0.107 0.893 23 H 0.199 0.801 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.152 0.848 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 -7.323 -13.682 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.205 5.205 3 C 0.010 3.990 4 C -0.197 4.197 5 C -0.092 4.092 6 C -0.130 4.130 7 C -0.052 4.052 8 C -0.571 4.571 9 H 0.044 0.956 10 C -0.198 4.198 11 N -0.599 5.599 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.217 1.217 15 H -0.162 1.162 16 C -0.016 4.016 17 C -0.294 4.294 18 C 0.299 3.701 19 O -0.501 6.501 20 H 0.101 0.899 21 H 0.118 0.882 22 H 0.126 0.874 23 H 0.215 0.785 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.170 0.830 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.947 -7.861 -13.587 18.584 hybrid contribution 0.501 0.432 0.368 0.757 sum -9.446 -7.429 -13.219 17.865 Atomic orbital electron populations 1.22426 0.75622 1.05620 1.05629 1.45425 1.10524 1.06488 1.58016 1.22311 0.93370 0.89842 0.93479 1.19561 0.92814 0.96594 1.10760 1.20380 1.00306 0.92029 0.96456 1.21364 0.99128 0.96417 0.96080 1.19589 0.96266 0.95235 0.94126 1.21621 1.36061 1.05608 0.93857 0.95631 1.26121 0.95424 0.99737 0.98515 1.70099 1.42597 1.25170 1.22082 0.85588 0.77801 0.78744 0.80069 1.19022 1.21653 1.16200 1.21683 1.01905 0.90960 0.87027 1.22093 0.92260 1.00720 1.14294 1.17466 0.90106 0.83024 0.79548 1.90880 1.70867 1.31228 1.57146 0.89930 0.88197 0.87429 0.78466 0.89226 0.90040 0.93994 0.93501 0.95897 0.95631 0.92689 0.83014 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.72 10.58 127.77 1.35 2.07 16 2 N -0.50 -10.88 2.99 -674.46 -2.01 -12.89 16 3 C 0.14 2.53 9.96 83.42 0.83 3.37 16 4 C -0.19 -4.17 5.11 -20.06 -0.10 -4.28 16 5 C -0.05 -1.25 5.34 29.85 0.16 -1.09 16 6 C -0.09 -3.12 5.13 30.59 0.16 -2.97 16 7 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 8 C -0.53 -30.00 9.66 25.60 0.25 -29.76 16 9 H 0.03 1.60 7.99 -2.91 -0.02 1.58 16 10 C 0.00 -0.12 5.47 84.65 0.46 0.34 16 11 N -0.96 -59.98 13.96 21.45 0.30 -59.68 16 12 Si 0.95 42.62 27.47 68.60 1.88 44.50 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 14 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 16 C 0.01 0.14 9.79 22.32 0.22 0.36 16 17 C -0.27 -7.04 9.99 22.40 0.22 -6.82 16 18 C 0.49 14.47 7.41 84.82 0.63 15.10 16 19 O -0.61 -22.34 16.39 -5.52 -0.09 -22.43 16 20 H 0.08 1.61 6.85 -2.39 -0.02 1.59 16 21 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.20 2.20 8.04 -2.91 -0.02 2.17 16 24 H 0.09 1.73 8.03 -2.39 -0.02 1.71 16 25 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 28 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 29 H 0.03 1.02 7.57 -2.39 -0.02 1.01 16 30 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -74.87 274.83 5.41 -69.46 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.03 Total: 5.21 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.30 Total: -24.18 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.71 Total: -72.57 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.09 Total: -22.43 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.50 kcal Total: -74.87 5.41 -69.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.337 kcal (2) G-P(sol) polarization free energy of solvation -74.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds