Wall clock time and date at job start Sun Mar 29 2020 22:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35759 * 119.62465 * 2 1 4 4 C 1.35349 * 120.70386 * 179.97438 * 3 2 1 5 5 C 1.40201 * 119.94753 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.36802 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.46946 * 275.00217 * 6 5 4 8 8 C 1.52997 * 109.46947 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00139 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47145 * 89.99836 * 13 11 9 15 15 H 1.48496 * 109.47547 * 210.00333 * 13 11 9 16 16 H 1.48499 * 109.47030 * 330.00237 * 13 11 9 17 17 C 1.36403 * 119.26500 * 0.25354 * 5 4 3 18 18 C 1.34665 * 119.62402 * 179.97438 * 2 1 3 19 19 O 1.22060 * 119.98654 * 0.02562 * 18 2 1 20 20 H 1.08997 * 109.47556 * 90.00418 * 1 2 3 21 21 H 1.09007 * 109.47217 * 209.99821 * 1 2 3 22 22 H 1.08993 * 109.47276 * 329.99168 * 1 2 3 23 23 H 1.07999 * 119.65016 * 359.96147 * 3 2 1 24 24 H 1.07997 * 120.03006 * 179.97438 * 4 3 2 25 25 H 1.08992 * 109.46894 * 154.99936 * 6 5 4 26 26 H 1.08996 * 109.46805 * 35.00086 * 6 5 4 27 27 H 1.09001 * 109.47372 * 60.00128 * 7 6 5 28 28 H 1.09004 * 109.47108 * 299.99872 * 7 6 5 29 29 H 1.09001 * 109.46832 * 59.99979 * 8 7 6 30 30 H 1.09000 * 109.47611 * 300.00276 * 8 7 6 31 31 H 0.96999 * 120.00061 * 179.97438 * 12 11 9 32 32 H 1.07994 * 120.34633 * 179.71974 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1360 1.1801 0.0000 4 6 3.4893 1.2056 0.0005 5 6 4.2119 0.0042 0.0016 6 6 5.7189 0.0215 0.0016 7 6 6.2274 0.1519 -1.4355 8 6 7.7572 0.1701 -1.4354 9 6 8.2582 0.2978 -2.8510 10 1 7.5555 0.3602 -3.6688 11 6 9.6133 0.3351 -3.1020 12 7 10.0505 0.4470 -4.3373 13 14 10.8286 0.2278 -1.6874 14 1 11.1667 -1.1954 -1.4321 15 1 12.0632 0.9749 -2.0377 16 1 10.2217 0.8189 -0.4677 17 6 3.5360 -1.1805 -0.0031 18 6 2.1306 -1.1706 0.0005 19 8 1.5132 -2.2235 0.0005 20 1 -0.3634 -0.0001 -1.0276 21 1 -0.3634 -0.8901 0.5138 22 1 -0.3633 0.8898 0.5139 23 1 1.5842 2.1085 -0.0006 24 1 4.0121 2.1506 0.0001 25 1 6.0928 -0.9052 0.4367 26 1 6.0724 0.8680 0.5903 27 1 5.8534 1.0786 -1.8706 28 1 5.8737 -0.6946 -2.0242 29 1 8.1316 -0.7565 -1.0001 30 1 8.1106 1.0167 -0.8468 31 1 11.0039 0.4736 -4.5139 32 1 4.0751 -2.1163 -0.0069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:08 Heat of formation + Delta-G solvation = -21.273215 kcal Electronic energy + Delta-G solvation = -14239.040419 eV Core-core repulsion = 11778.483172 eV Total energy + Delta-G solvation = -2460.557247 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.24841 -37.13573 -35.94183 -33.68564 -31.88038 -29.96150 -28.76571 -26.61886 -23.97866 -23.37543 -21.09321 -20.06847 -17.46261 -17.38161 -16.69718 -16.03566 -15.92622 -14.51023 -14.34702 -13.90089 -13.85250 -13.34904 -12.99780 -12.81594 -12.33656 -12.19264 -12.00380 -11.63073 -11.43346 -11.07956 -10.74993 -10.16792 -9.92253 -9.85104 -9.71281 -9.33040 -9.14884 -8.53296 -7.94704 -6.03590 -4.01789 0.88332 1.91596 2.62707 3.31430 3.38712 3.41624 3.69122 4.45175 4.45676 4.55835 4.85733 5.01250 5.09172 5.27345 5.30777 5.33925 5.41949 5.69260 5.82652 5.93608 6.08146 6.19186 6.36881 6.54529 6.63583 6.69972 6.88736 7.05676 7.29884 7.42370 7.79802 8.06865 8.54704 9.01603 9.58817 11.09992 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056292 B = 0.004980 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.283147 B = 5621.467575 C = 5649.738614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.505 5.505 3 C 0.119 3.881 4 C -0.215 4.215 5 C 0.030 3.970 6 C -0.096 4.096 7 C -0.095 4.095 8 C -0.014 4.014 9 C -0.521 4.521 10 H 0.071 0.929 11 C 0.065 3.935 12 N -0.905 5.905 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.265 1.265 17 C -0.252 4.252 18 C 0.514 3.486 19 O -0.564 6.564 20 H 0.073 0.927 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.160 0.840 24 H 0.147 0.853 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.263 0.737 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.217 3.799 11.227 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.217 5.217 3 C -0.007 4.007 4 C -0.238 4.238 5 C 0.027 3.973 6 C -0.133 4.133 7 C -0.132 4.132 8 C -0.052 4.052 9 C -0.559 4.559 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.544 5.544 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.190 1.190 17 C -0.274 4.274 18 C 0.318 3.682 19 O -0.448 6.448 20 H 0.092 0.908 21 H 0.110 0.890 22 H 0.100 0.900 23 H 0.177 0.823 24 H 0.164 0.836 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.501 3.133 11.118 20.142 hybrid contribution 0.789 0.091 0.525 0.952 sum -15.712 3.224 11.643 19.819 Atomic orbital electron populations 1.22088 0.77740 1.04570 1.03670 1.45363 1.08942 1.06995 1.60390 1.21859 0.93757 0.89184 0.95864 1.20695 0.92270 0.99537 1.11289 1.20459 0.97422 0.92344 0.87096 1.20985 0.88596 1.03212 1.00523 1.21442 0.98269 1.01562 0.91957 1.19600 0.91309 0.96318 0.97949 1.21154 0.92590 1.50281 0.91878 0.91070 1.25040 0.98469 0.94588 0.95446 1.69918 1.14447 1.50958 1.19040 0.86767 0.80695 0.78452 0.83294 1.20290 1.21434 1.18986 1.21990 0.92153 0.99833 1.13404 1.17156 0.89308 0.82554 0.79197 1.90922 1.70036 1.29669 1.54164 0.90843 0.89030 0.89966 0.82250 0.83567 0.90717 0.90545 0.92422 0.92474 0.96960 0.96528 0.92754 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.36 59.84 0.62 1.11 16 2 N -0.50 -5.81 2.99 -127.20 -0.38 -6.19 16 3 C 0.12 1.10 10.28 -16.84 -0.17 0.93 16 4 C -0.21 -2.38 9.73 -39.87 -0.39 -2.77 16 5 C 0.03 0.42 5.14 -104.55 -0.54 -0.12 16 6 C -0.10 -1.44 5.37 -27.88 -0.15 -1.59 16 7 C -0.09 -1.80 5.13 -26.73 -0.14 -1.94 16 8 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 9 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 10 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 11 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 12 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 13 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 16 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 17 C -0.25 -3.83 9.63 -39.38 -0.38 -4.21 16 18 C 0.51 8.01 7.41 -15.44 -0.11 7.90 16 19 O -0.56 -10.57 16.64 4.86 0.08 -10.49 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.09 0.85 7.39 -51.92 -0.38 0.46 16 22 H 0.08 0.37 8.01 -51.93 -0.42 -0.05 16 23 H 0.16 0.78 8.04 -52.49 -0.42 0.36 16 24 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 25 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 26 H 0.08 1.05 8.13 -51.93 -0.42 0.62 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 30 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -34.47 275.26 -6.38 -40.85 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.53 Total: -3.52 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -1.80 Total: -14.50 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.39 Total: -33.44 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.47 -6.38 -40.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.575 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds