Wall clock time and date at job start Sun Mar 29 2020 22:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35759 * 119.62465 * 2 1 4 4 C 1.35349 * 120.70386 * 179.97438 * 3 2 1 5 5 C 1.40201 * 119.94753 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.36802 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.46946 * 275.00217 * 6 5 4 8 8 C 1.52997 * 109.46947 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00139 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47145 * 89.99836 * 13 11 9 15 15 H 1.48496 * 109.47547 * 210.00333 * 13 11 9 16 16 H 1.48499 * 109.47030 * 330.00237 * 13 11 9 17 17 C 1.36403 * 119.26500 * 0.25354 * 5 4 3 18 18 C 1.34665 * 119.62402 * 179.97438 * 2 1 3 19 19 O 1.22060 * 119.98654 * 0.02562 * 18 2 1 20 20 H 1.08997 * 109.47556 * 90.00418 * 1 2 3 21 21 H 1.09007 * 109.47217 * 209.99821 * 1 2 3 22 22 H 1.08993 * 109.47276 * 329.99168 * 1 2 3 23 23 H 1.07999 * 119.65016 * 359.96147 * 3 2 1 24 24 H 1.07997 * 120.03006 * 179.97438 * 4 3 2 25 25 H 1.08992 * 109.46894 * 154.99936 * 6 5 4 26 26 H 1.08996 * 109.46805 * 35.00086 * 6 5 4 27 27 H 1.09001 * 109.47372 * 60.00128 * 7 6 5 28 28 H 1.09004 * 109.47108 * 299.99872 * 7 6 5 29 29 H 1.09001 * 109.46832 * 59.99979 * 8 7 6 30 30 H 1.09000 * 109.47611 * 300.00276 * 8 7 6 31 31 H 0.96999 * 120.00061 * 179.97438 * 12 11 9 32 32 H 1.07994 * 120.34633 * 179.71974 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1360 1.1801 0.0000 4 6 3.4893 1.2056 0.0005 5 6 4.2119 0.0042 0.0016 6 6 5.7189 0.0215 0.0016 7 6 6.2274 0.1519 -1.4355 8 6 7.7572 0.1701 -1.4354 9 6 8.2582 0.2978 -2.8510 10 1 7.5555 0.3602 -3.6688 11 6 9.6133 0.3351 -3.1020 12 7 10.0505 0.4470 -4.3373 13 14 10.8286 0.2278 -1.6874 14 1 11.1667 -1.1954 -1.4321 15 1 12.0632 0.9749 -2.0377 16 1 10.2217 0.8189 -0.4677 17 6 3.5360 -1.1805 -0.0031 18 6 2.1306 -1.1706 0.0005 19 8 1.5132 -2.2235 0.0005 20 1 -0.3634 -0.0001 -1.0276 21 1 -0.3634 -0.8901 0.5138 22 1 -0.3633 0.8898 0.5139 23 1 1.5842 2.1085 -0.0006 24 1 4.0121 2.1506 0.0001 25 1 6.0928 -0.9052 0.4367 26 1 6.0724 0.8680 0.5903 27 1 5.8534 1.0786 -1.8706 28 1 5.8737 -0.6946 -2.0242 29 1 8.1316 -0.7565 -1.0001 30 1 8.1106 1.0167 -0.8468 31 1 11.0039 0.4736 -4.5139 32 1 4.0751 -2.1163 -0.0069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:08 Heat of formation + Delta-G solvation = -43.891651 kcal Electronic energy + Delta-G solvation = -14240.021228 eV Core-core repulsion = 11778.483172 eV Total energy + Delta-G solvation = -2461.538056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.24637 -38.29908 -37.13133 -35.39114 -33.67586 -30.99606 -30.15613 -27.79905 -25.36754 -24.49255 -22.49477 -21.62465 -18.89256 -18.44436 -18.23268 -17.02667 -16.97041 -16.30783 -15.76335 -15.11574 -15.01328 -14.78819 -14.24054 -14.03015 -13.65009 -13.50081 -13.15074 -12.94520 -12.79808 -12.44256 -12.35556 -11.76698 -11.71418 -11.41589 -11.31889 -10.99486 -10.74198 -10.54879 -8.95116 -8.27257 -6.31773 -0.08670 0.90549 1.39410 1.40696 1.52974 1.76839 2.38957 2.65539 3.08618 3.65541 3.81028 3.91393 4.13453 4.36858 4.42276 4.43112 4.44983 4.58758 4.68125 4.79044 4.96629 5.03712 5.09091 5.14734 5.19433 5.52114 5.55827 5.64177 5.69588 5.71980 6.09281 6.31050 6.76981 6.99029 7.33103 8.89895 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056292 B = 0.004980 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.283147 B = 5621.467575 C = 5649.738614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.501 5.501 3 C 0.147 3.853 4 C -0.235 4.235 5 C 0.040 3.960 6 C -0.087 4.087 7 C -0.086 4.086 8 C -0.013 4.013 9 C -0.535 4.535 10 H 0.027 0.973 11 C 0.000 4.000 12 N -0.955 5.955 13 Si 0.954 3.046 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.238 1.238 17 C -0.290 4.290 18 C 0.499 3.501 19 O -0.614 6.614 20 H 0.082 0.918 21 H 0.072 0.928 22 H 0.130 0.870 23 H 0.220 0.780 24 H 0.173 0.827 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.017 0.983 30 H 0.031 0.969 31 H 0.266 0.734 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.954 6.106 13.552 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.210 5.210 3 C 0.021 3.979 4 C -0.257 4.257 5 C 0.036 3.964 6 C -0.124 4.124 7 C -0.124 4.124 8 C -0.050 4.050 9 C -0.573 4.573 10 H 0.046 0.954 11 C -0.196 4.196 12 N -0.596 5.596 13 Si 0.777 3.223 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.161 1.161 17 C -0.312 4.312 18 C 0.305 3.695 19 O -0.503 6.503 20 H 0.101 0.899 21 H 0.091 0.909 22 H 0.148 0.852 23 H 0.236 0.764 24 H 0.190 0.810 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.271 5.469 13.455 22.566 hybrid contribution 0.925 -0.539 -0.300 1.112 sum -16.345 4.930 13.155 21.553 Atomic orbital electron populations 1.22402 0.75376 1.06066 1.04785 1.45512 1.10617 1.06640 1.58231 1.22744 0.93633 0.89937 0.91635 1.21029 0.93280 0.99239 1.12197 1.20470 0.96760 0.93072 0.86122 1.20844 0.89547 1.04323 0.97713 1.21250 0.95641 1.00804 0.94707 1.19572 0.94016 0.96874 0.94578 1.21558 0.92299 1.49846 0.93601 0.95424 1.26086 1.00852 0.94103 0.98530 1.70085 1.15115 1.52604 1.21825 0.85603 0.77671 0.78907 0.80127 1.19561 1.21082 1.16122 1.21897 0.92582 1.00041 1.16655 1.17235 0.89481 0.83297 0.79528 1.90877 1.70820 1.31564 1.57054 0.89922 0.90879 0.85167 0.76396 0.80969 0.90697 0.88166 0.92299 0.94505 0.96440 0.95099 0.92559 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.70 10.36 127.77 1.32 2.03 16 2 N -0.50 -10.28 2.99 -674.49 -2.01 -12.30 16 3 C 0.15 2.03 10.28 83.42 0.86 2.88 16 4 C -0.24 -4.34 9.73 22.08 0.21 -4.12 16 5 C 0.04 1.05 5.14 -19.81 -0.10 0.95 16 6 C -0.09 -2.46 5.37 29.85 0.16 -2.30 16 7 C -0.09 -3.24 5.13 30.59 0.16 -3.08 16 8 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 9 C -0.54 -31.06 9.66 25.60 0.25 -30.81 16 10 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 11 C 0.00 0.03 5.47 84.65 0.46 0.49 16 12 N -0.96 -60.63 13.96 21.44 0.30 -60.33 16 13 Si 0.95 43.91 27.47 68.60 1.88 45.79 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 17 C -0.29 -9.01 9.63 22.40 0.22 -8.79 16 18 C 0.50 15.69 7.41 84.82 0.63 16.32 16 19 O -0.61 -24.09 16.64 -5.51 -0.09 -24.19 16 20 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.07 1.28 7.39 -2.38 -0.02 1.26 16 22 H 0.13 0.46 8.01 -2.39 -0.02 0.44 16 23 H 0.22 0.47 8.04 -2.91 -0.02 0.45 16 24 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 25 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 26 H 0.10 2.37 8.13 -2.39 -0.02 2.36 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 30 H 0.03 1.32 7.20 -2.39 -0.02 1.31 16 31 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -79.69 275.26 5.40 -74.29 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.03 Total: 3.64 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 4.29 Total: -26.91 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.71 Total: -72.63 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.09 Total: -24.19 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -79.69 5.40 -74.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.401 kcal (2) G-P(sol) polarization free energy of solvation -79.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds