Wall clock time and date at job start Sun Mar 29 2020 22:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35678 * 117.00129 * 2 1 4 4 C 1.38917 * 119.68267 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11132 * 180.02562 * 4 3 2 6 6 C 1.38827 * 118.48287 * 359.97438 * 5 4 3 7 7 C 1.38048 * 119.29106 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.58150 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46912 * 124.99384 * 8 7 6 10 10 C 1.52997 * 109.47060 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00362 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99850 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47052 * 89.99717 * 15 13 11 17 17 H 1.48495 * 109.47307 * 209.99656 * 15 13 11 18 18 H 1.48500 * 109.47143 * 330.00164 * 15 13 11 19 19 N 1.31958 * 120.83336 * 0.26606 * 7 6 5 20 20 H 1.08999 * 109.46761 * 299.99587 * 1 2 3 21 21 H 1.09005 * 109.46978 * 59.98989 * 1 2 3 22 22 H 1.08996 * 109.47250 * 179.97438 * 1 2 3 23 23 H 1.08007 * 120.44644 * 0.04431 * 4 3 2 24 24 H 1.07998 * 120.75544 * 179.97438 * 5 4 3 25 25 H 1.08006 * 120.35480 * 180.02562 * 6 5 4 26 26 H 1.09001 * 109.46980 * 4.99511 * 8 7 6 27 27 H 1.08992 * 109.47158 * 244.99617 * 8 7 6 28 28 H 1.09002 * 109.47398 * 300.00078 * 9 8 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 9 8 7 30 30 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 31 31 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 32 32 H 0.96994 * 119.99814 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2506 3.6490 0.0005 7 6 1.8772 3.5096 0.0010 8 6 1.0047 4.7384 0.0022 9 6 0.0344 4.6760 -1.1792 10 6 -0.8518 5.9231 -1.1776 11 6 -1.8079 5.8614 -2.3408 12 1 -1.7860 5.0169 -3.0136 13 6 -2.7115 6.8826 -2.5455 14 7 -3.5462 6.8285 -3.5604 15 14 -2.7509 8.3423 -1.3806 16 1 -1.8270 9.3949 -1.8744 17 1 -4.1311 8.8862 -1.3150 18 1 -2.3257 7.9063 -0.0262 19 7 1.3188 2.3140 0.0063 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 4.0230 0.3694 -0.0017 24 1 5.1255 2.5945 0.0000 25 1 3.6995 4.6314 0.0006 26 1 1.6291 5.6274 -0.0870 27 1 0.4406 4.7825 0.9337 28 1 0.5986 4.6318 -2.1108 29 1 -0.5899 3.7869 -1.0900 30 1 -1.4159 5.9668 -0.2460 31 1 -0.2279 6.8124 -1.2666 32 1 -4.1815 7.5471 -3.7045 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:36 Heat of formation + Delta-G solvation = -20.516505 kcal Electronic energy + Delta-G solvation = -14317.746232 eV Core-core repulsion = 11857.221798 eV Total energy + Delta-G solvation = -2460.524434 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55497 -37.98781 -34.81317 -32.72222 -31.93955 -30.58582 -28.00460 -26.74231 -23.89979 -22.87649 -21.57652 -19.99297 -18.08156 -16.83635 -16.40019 -15.94849 -15.91516 -14.56064 -14.36911 -13.97420 -13.79825 -13.39788 -12.99905 -12.59474 -12.13998 -12.02705 -11.68284 -11.60241 -11.14508 -10.86490 -10.73606 -9.98750 -9.84077 -9.77502 -9.54960 -9.28554 -9.12369 -8.50067 -8.32864 -6.00450 -3.97978 1.22757 1.35779 3.15047 3.32899 3.40179 3.44139 3.84957 4.32094 4.48422 4.80710 5.08576 5.15676 5.26192 5.33558 5.37335 5.42675 5.64210 5.70137 5.77006 5.87599 6.06206 6.20686 6.24862 6.49533 6.64081 6.73409 6.96439 7.29292 7.39179 7.49681 7.83866 8.03674 8.59210 9.05279 9.62192 11.13261 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037563 B = 0.005889 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.238007 B = 4753.620891 C = 5240.061148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.313 6.313 3 C 0.322 3.678 4 C -0.208 4.208 5 C -0.041 4.041 6 C -0.215 4.215 7 C 0.186 3.814 8 C -0.078 4.078 9 C -0.092 4.092 10 C -0.015 4.015 11 C -0.518 4.518 12 H 0.070 0.930 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.265 1.265 19 N -0.531 5.531 20 H 0.059 0.941 21 H 0.063 0.937 22 H 0.093 0.907 23 H 0.136 0.864 24 H 0.138 0.862 25 H 0.136 0.864 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.011 0.989 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.594 -9.390 9.216 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.220 6.220 3 C 0.142 3.858 4 C -0.228 4.228 5 C -0.067 4.067 6 C -0.235 4.235 7 C 0.050 3.950 8 C -0.115 4.115 9 C -0.130 4.130 10 C -0.052 4.052 11 C -0.556 4.556 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.190 1.190 19 N -0.255 5.255 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.111 0.889 23 H 0.154 0.846 24 H 0.156 0.844 25 H 0.154 0.846 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.636 -9.651 9.138 18.339 hybrid contribution 0.527 0.943 0.441 1.167 sum 13.164 -8.708 9.579 18.463 Atomic orbital electron populations 1.22872 0.76992 1.02671 1.03072 1.86196 1.23147 1.24753 1.87920 1.19859 0.89307 0.84812 0.91790 1.20960 0.92038 0.99402 1.10424 1.21344 1.00254 0.91338 0.93722 1.21869 0.94231 0.99871 1.07515 1.21218 0.91901 0.92025 0.89869 1.20836 0.97322 0.91679 1.01708 1.21375 0.96243 1.00644 0.94689 1.19602 0.94950 0.93146 0.97506 1.21162 1.16377 1.07204 1.10866 0.91137 1.25047 0.95202 0.98198 0.95171 1.69923 1.21540 1.33472 1.29565 0.86764 0.77148 0.83030 0.82258 1.20331 1.21458 1.18976 1.67148 1.40830 0.98344 1.19194 0.92215 0.91814 0.88860 0.84592 0.84439 0.84619 0.90448 0.90180 0.93096 0.91825 0.96576 0.97107 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 101.05 1.05 1.53 16 2 O -0.31 -4.45 10.48 -18.74 -0.20 -4.65 16 3 C 0.32 4.85 7.49 -17.12 -0.13 4.72 16 4 C -0.21 -2.58 10.04 -39.28 -0.39 -2.97 16 5 C -0.04 -0.46 10.17 -39.31 -0.40 -0.86 16 6 C -0.21 -2.74 9.70 -39.43 -0.38 -3.12 16 7 C 0.19 2.91 6.17 -82.61 -0.51 2.40 16 8 C -0.08 -1.27 5.61 -27.88 -0.16 -1.43 16 9 C -0.09 -1.88 5.01 -26.73 -0.13 -2.02 16 10 C -0.01 -0.36 4.04 -27.89 -0.11 -0.47 16 11 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 12 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 13 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 14 N -0.91 -28.43 13.96 55.43 0.77 -27.65 16 15 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 19 N -0.53 -8.85 8.74 -9.55 -0.08 -8.93 16 20 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 21 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 22 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 24 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 25 H 0.14 1.41 7.94 -52.48 -0.42 1.00 16 26 H 0.08 1.12 7.86 -51.93 -0.41 0.71 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.38 7.95 -51.93 -0.41 0.97 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 276.73 15.07 4.17 4.17 Total: -1.00 -32.57 276.73 -6.15 -38.72 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -4.55 Total: -3.09 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.60 Total: -15.86 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.69 Total: -36.58 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.20 Total: -4.65 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.57 -6.15 -38.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.204 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds