Wall clock time and date at job start Sun Mar 29 2020 22:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35678 * 117.00129 * 2 1 4 4 C 1.38917 * 119.68267 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11132 * 180.02562 * 4 3 2 6 6 C 1.38827 * 118.48287 * 359.97438 * 5 4 3 7 7 C 1.38048 * 119.29106 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.58150 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46912 * 124.99384 * 8 7 6 10 10 C 1.52997 * 109.47060 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00362 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99850 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47052 * 89.99717 * 15 13 11 17 17 H 1.48495 * 109.47307 * 209.99656 * 15 13 11 18 18 H 1.48500 * 109.47143 * 330.00164 * 15 13 11 19 19 N 1.31958 * 120.83336 * 0.26606 * 7 6 5 20 20 H 1.08999 * 109.46761 * 299.99587 * 1 2 3 21 21 H 1.09005 * 109.46978 * 59.98989 * 1 2 3 22 22 H 1.08996 * 109.47250 * 179.97438 * 1 2 3 23 23 H 1.08007 * 120.44644 * 0.04431 * 4 3 2 24 24 H 1.07998 * 120.75544 * 179.97438 * 5 4 3 25 25 H 1.08006 * 120.35480 * 180.02562 * 6 5 4 26 26 H 1.09001 * 109.46980 * 4.99511 * 8 7 6 27 27 H 1.08992 * 109.47158 * 244.99617 * 8 7 6 28 28 H 1.09002 * 109.47398 * 300.00078 * 9 8 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 9 8 7 30 30 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 31 31 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 32 32 H 0.96994 * 119.99814 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2506 3.6490 0.0005 7 6 1.8772 3.5096 0.0010 8 6 1.0047 4.7384 0.0022 9 6 0.0344 4.6760 -1.1792 10 6 -0.8518 5.9231 -1.1776 11 6 -1.8079 5.8614 -2.3408 12 1 -1.7860 5.0169 -3.0136 13 6 -2.7115 6.8826 -2.5455 14 7 -3.5462 6.8285 -3.5604 15 14 -2.7509 8.3423 -1.3806 16 1 -1.8270 9.3949 -1.8744 17 1 -4.1311 8.8862 -1.3150 18 1 -2.3257 7.9063 -0.0262 19 7 1.3188 2.3140 0.0063 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 4.0230 0.3694 -0.0017 24 1 5.1255 2.5945 0.0000 25 1 3.6995 4.6314 0.0006 26 1 1.6291 5.6274 -0.0870 27 1 0.4406 4.7825 0.9337 28 1 0.5986 4.6318 -2.1108 29 1 -0.5899 3.7869 -1.0900 30 1 -1.4159 5.9668 -0.2460 31 1 -0.2279 6.8124 -1.2666 32 1 -4.1815 7.5471 -3.7045 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:35 Heat of formation + Delta-G solvation = -42.966872 kcal Electronic energy + Delta-G solvation = -14318.719753 eV Core-core repulsion = 11857.221798 eV Total energy + Delta-G solvation = -2461.497955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.59020 -39.03872 -36.45478 -34.53961 -33.21005 -32.00661 -29.44899 -27.96296 -25.50801 -23.90450 -22.95700 -21.72215 -19.17959 -18.86697 -17.62183 -16.98955 -16.85749 -16.35261 -15.93424 -15.18120 -15.05900 -14.77319 -14.54112 -13.97801 -13.75014 -13.33908 -13.06724 -12.77610 -12.61473 -12.51593 -12.07343 -11.77004 -11.59873 -11.47076 -11.32898 -10.76747 -10.74276 -10.44802 -9.37281 -8.28982 -6.33846 0.19696 0.39486 1.37105 1.40129 1.52530 2.17513 2.37844 2.80591 3.06354 3.24924 3.83102 4.14440 4.22092 4.31035 4.37487 4.38669 4.43244 4.47908 4.60109 4.75205 4.88790 4.98583 5.04798 5.07282 5.15024 5.29736 5.52894 5.57000 5.64143 5.68789 6.25123 6.30044 6.74128 6.97800 7.30705 8.88445 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037563 B = 0.005889 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.238007 B = 4753.620891 C = 5240.061148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.321 6.321 3 C 0.292 3.708 4 C -0.203 4.203 5 C -0.032 4.032 6 C -0.207 4.207 7 C 0.154 3.846 8 C -0.067 4.067 9 C -0.081 4.081 10 C -0.011 4.011 11 C -0.536 4.536 12 H 0.022 0.978 13 C 0.000 4.000 14 N -0.956 5.956 15 Si 0.958 3.042 16 H -0.262 1.262 17 H -0.285 1.285 18 H -0.243 1.243 19 N -0.564 5.564 20 H 0.052 0.948 21 H 0.041 0.959 22 H 0.126 0.874 23 H 0.161 0.839 24 H 0.182 0.818 25 H 0.164 0.836 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.022 0.978 31 H 0.028 0.972 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.110 -8.427 11.137 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.228 6.228 3 C 0.113 3.887 4 C -0.223 4.223 5 C -0.057 4.057 6 C -0.227 4.227 7 C 0.018 3.982 8 C -0.104 4.104 9 C -0.119 4.119 10 C -0.048 4.048 11 C -0.574 4.574 12 H 0.040 0.960 13 C -0.196 4.196 14 N -0.596 5.596 15 Si 0.780 3.220 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.166 1.166 19 N -0.289 5.289 20 H 0.071 0.929 21 H 0.060 0.940 22 H 0.144 0.856 23 H 0.179 0.821 24 H 0.200 0.800 25 H 0.181 0.819 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.170 -8.700 11.065 20.695 hybrid contribution -0.240 0.528 -0.245 0.629 sum 14.930 -8.173 10.820 20.169 Atomic orbital electron populations 1.22935 0.76531 1.04337 1.01615 1.86182 1.23675 1.24785 1.88169 1.20293 0.90571 0.84572 0.93280 1.21394 0.91020 1.01237 1.08690 1.21862 1.02267 0.89994 0.91587 1.22195 0.92975 1.01911 1.05656 1.21225 0.93268 0.91277 0.92422 1.20677 0.96856 0.93600 0.99313 1.21146 0.96324 0.97939 0.96461 1.19551 0.94612 0.95389 0.95232 1.21533 1.18077 1.05896 1.11936 0.95963 1.26129 0.94433 1.01920 0.97163 1.70092 1.22637 1.34983 1.31923 0.85550 0.77632 0.78441 0.80369 1.18675 1.21088 1.16607 1.67014 1.42397 0.99310 1.20179 0.92937 0.93982 0.85614 0.82132 0.80032 0.81852 0.87841 0.90078 0.94375 0.94273 0.96008 0.95408 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.03 10.38 113.37 1.18 2.21 16 2 O -0.32 -9.10 10.48 -89.96 -0.94 -10.05 16 3 C 0.29 8.65 7.49 84.79 0.63 9.28 16 4 C -0.20 -4.52 10.04 22.47 0.23 -4.29 16 5 C -0.03 -0.59 10.17 22.44 0.23 -0.36 16 6 C -0.21 -4.61 9.70 22.37 0.22 -4.40 16 7 C 0.15 4.63 6.17 42.50 0.26 4.89 16 8 C -0.07 -2.10 5.61 29.85 0.17 -1.93 16 9 C -0.08 -3.37 5.01 30.59 0.15 -3.22 16 10 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 11 C -0.54 -32.36 9.66 25.60 0.25 -32.11 16 12 H 0.02 1.49 7.99 -2.91 -0.02 1.47 16 13 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 14 N -0.96 -61.72 13.96 21.45 0.30 -61.42 16 15 Si 0.96 44.73 27.47 68.60 1.88 46.61 16 16 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 19 N -0.56 -18.92 8.74 -296.99 -2.60 -21.52 16 20 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 21 H 0.04 1.21 8.11 -2.38 -0.02 1.19 16 22 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 24 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 25 H 0.16 2.65 7.94 -2.91 -0.02 2.62 16 26 H 0.10 2.67 7.86 -2.39 -0.02 2.65 16 27 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 1.78 7.95 -2.39 -0.02 1.76 16 30 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 31 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 32 H 0.27 15.94 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -73.71 276.73 3.57 -70.14 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.03 Total: 6.10 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 3.90 Total: -29.87 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -2.30 Total: -82.94 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.94 Total: -10.05 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -73.71 3.57 -70.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.170 kcal (2) G-P(sol) polarization free energy of solvation -73.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds