Wall clock time and date at job start Sun Mar 29 2020 21:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 C 1.38227 * 120.42363 * 269.72371 * 12 11 10 14 14 N 1.31853 * 120.76669 * 179.77449 * 13 12 11 15 15 C 1.31883 * 121.72421 * 0.48219 * 14 13 12 16 16 C 1.38182 * 120.76510 * 359.78433 * 15 14 13 17 17 C 1.50705 * 120.41544 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47205 * 270.01624 * 17 16 15 19 19 C 1.38629 * 120.41912 * 90.00087 * 12 11 10 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 26 26 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 27 27 H 1.08004 * 119.61100 * 0.02562 * 13 12 11 28 28 H 1.08006 * 119.61667 * 179.75155 * 15 14 13 29 29 H 1.08996 * 109.47218 * 30.02606 * 17 16 15 30 30 H 1.09002 * 109.46608 * 150.02165 * 17 16 15 31 31 H 0.96700 * 113.99875 * 179.97438 * 18 17 16 32 32 H 1.08003 * 120.79220 * 359.95632 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4593 -6.1326 0.0005 13 6 2.9089 -6.6685 -1.1917 14 7 3.7690 -7.6678 -1.2001 15 6 4.2252 -8.1996 -0.0828 16 6 3.8164 -7.7197 1.1468 17 6 4.3424 -8.3337 2.4186 18 8 3.4845 -9.4032 2.8215 19 6 2.9163 -6.6661 1.1957 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 0.8537 -5.0445 0.8914 26 1 0.8532 -5.0451 -0.8886 27 1 2.5546 -6.2611 -2.1271 28 1 4.9260 -9.0201 -0.1295 29 1 5.3476 -8.7188 2.2476 30 1 4.3718 -7.5767 3.2024 31 1 3.7631 -9.8458 3.6349 32 1 2.5795 -6.2702 2.1425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:30 Heat of formation + Delta-G solvation = -41.883432 kcal Electronic energy + Delta-G solvation = -14026.299458 eV Core-core repulsion = 11564.848485 eV Total energy + Delta-G solvation = -2461.450973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.24593 -37.03382 -35.12383 -32.94022 -32.50024 -30.64486 -26.99880 -26.41789 -23.95997 -22.79051 -21.00510 -20.00243 -17.69470 -16.91052 -16.68110 -16.26897 -15.03667 -14.47900 -14.33991 -13.78906 -13.74968 -13.46522 -12.96245 -12.56124 -12.35689 -12.00895 -11.52820 -11.24181 -10.83537 -10.76232 -10.51374 -10.36117 -9.75471 -9.67260 -9.49092 -9.23126 -9.11282 -8.61283 -8.35838 -6.00723 -4.03018 1.11841 1.38924 3.30477 3.38025 3.42331 3.74900 4.24523 4.45692 4.56609 4.73649 4.79829 5.04266 5.09609 5.18565 5.30259 5.35219 5.48673 5.77519 5.91449 6.01684 6.22581 6.30746 6.34806 6.73860 6.80307 6.84108 7.09839 7.34657 7.66920 7.80611 7.99389 8.04481 8.42167 9.04348 9.61250 11.10611 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044338 B = 0.004785 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.358473 B = 5850.588184 C = 6011.017141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.103 4.103 11 C -0.081 4.081 12 C -0.115 4.115 13 C 0.102 3.898 14 N -0.486 5.486 15 C 0.101 3.899 16 C -0.148 4.148 17 C 0.124 3.876 18 O -0.568 6.568 19 C -0.057 4.057 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.017 0.983 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.157 0.843 28 H 0.150 0.850 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.380 0.620 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.322 -15.895 4.271 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.141 4.141 11 C -0.119 4.119 12 C -0.117 4.117 13 C -0.055 4.055 14 N -0.194 5.194 15 C -0.057 4.057 16 C -0.150 4.150 17 C 0.045 3.955 18 O -0.374 6.374 19 C -0.083 4.083 20 H 0.069 0.931 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.174 0.826 28 H 0.167 0.833 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.227 0.773 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.149 -15.931 2.912 17.703 hybrid contribution 0.466 1.200 1.349 1.864 sum 7.616 -14.731 4.261 17.122 Atomic orbital electron populations 1.69972 1.06049 1.26483 1.51003 1.25022 0.94839 0.99248 0.95342 0.86554 0.80132 0.83839 0.77595 1.19762 1.20982 1.21013 1.21298 0.93071 0.91103 1.50393 0.92694 1.19128 0.93986 0.91269 0.97326 1.21641 0.99033 0.92851 1.00540 1.20763 0.95880 0.92262 1.03027 1.21223 0.99009 0.97891 0.93606 1.22777 0.92777 0.91893 0.98004 1.67692 1.10504 1.10266 1.30920 1.22522 0.98000 0.97915 0.87230 1.20568 1.00493 0.98184 0.95705 1.20864 0.92287 0.89044 0.93255 1.86580 1.53938 1.49765 1.47091 1.21440 0.94008 0.94116 0.98772 0.93057 0.96539 0.96457 0.93195 0.93389 0.91072 0.90835 0.82583 0.83283 0.92513 0.92459 0.77339 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -2.09 5.13 -26.74 -0.14 -2.23 16 11 C -0.08 -1.35 5.37 -27.89 -0.15 -1.50 16 12 C -0.12 -1.77 5.15 -104.48 -0.54 -2.31 16 13 C 0.10 1.55 10.86 -17.55 -0.19 1.36 16 14 N -0.49 -7.44 10.36 -13.25 -0.14 -7.57 16 15 C 0.10 1.34 10.86 -17.55 -0.19 1.15 16 16 C -0.15 -1.90 5.53 -104.48 -0.58 -2.48 16 17 C 0.12 1.17 7.20 36.01 0.26 1.43 16 18 O -0.57 -5.62 13.64 -35.23 -0.48 -6.10 16 19 C -0.06 -0.81 9.55 -39.28 -0.37 -1.19 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 26 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 27 H 0.16 2.11 8.06 -52.48 -0.42 1.69 16 28 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 29 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.38 1.75 9.12 45.56 0.42 2.16 16 32 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 281.63 15.07 4.24 4.24 Total: -1.00 -32.85 281.63 -6.87 -39.73 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.77 Total: -1.82 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.45 Total: -18.96 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.60 Total: -33.76 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.48 Total: -6.10 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.85 -6.87 -39.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.155 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds