Wall clock time and date at job start Sun Mar 29 2020 21:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 C 1.38227 * 120.42363 * 269.72371 * 12 11 10 14 14 N 1.31853 * 120.76669 * 179.77449 * 13 12 11 15 15 C 1.31883 * 121.72421 * 0.48219 * 14 13 12 16 16 C 1.38182 * 120.76510 * 359.78433 * 15 14 13 17 17 C 1.50705 * 120.41544 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47205 * 270.01624 * 17 16 15 19 19 C 1.38629 * 120.41912 * 90.00087 * 12 11 10 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 26 26 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 27 27 H 1.08004 * 119.61100 * 0.02562 * 13 12 11 28 28 H 1.08006 * 119.61667 * 179.75155 * 15 14 13 29 29 H 1.08996 * 109.47218 * 30.02606 * 17 16 15 30 30 H 1.09002 * 109.46608 * 150.02165 * 17 16 15 31 31 H 0.96700 * 113.99875 * 179.97438 * 18 17 16 32 32 H 1.08003 * 120.79220 * 359.95632 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4593 -6.1326 0.0005 13 6 2.9089 -6.6685 -1.1917 14 7 3.7690 -7.6678 -1.2001 15 6 4.2252 -8.1996 -0.0828 16 6 3.8164 -7.7197 1.1468 17 6 4.3424 -8.3337 2.4186 18 8 3.4845 -9.4032 2.8215 19 6 2.9163 -6.6661 1.1957 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 0.8537 -5.0445 0.8914 26 1 0.8532 -5.0451 -0.8886 27 1 2.5546 -6.2611 -2.1271 28 1 4.9260 -9.0201 -0.1295 29 1 5.3476 -8.7188 2.2476 30 1 4.3718 -7.5767 3.2024 31 1 3.7631 -9.8458 3.6349 32 1 2.5795 -6.2702 2.1425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:30 Heat of formation + Delta-G solvation = -64.512673 kcal Electronic energy + Delta-G solvation = -14027.280735 eV Core-core repulsion = 11564.848485 eV Total energy + Delta-G solvation = -2462.432251 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31297 -37.78532 -36.70705 -34.79822 -33.54376 -32.26918 -28.70717 -27.28204 -25.66095 -23.98034 -22.48114 -21.48299 -18.48285 -18.37006 -17.90754 -17.74696 -16.56981 -15.95240 -15.57148 -14.95973 -14.91345 -14.74212 -14.19945 -14.00260 -13.83984 -13.43196 -13.13188 -12.69907 -12.61133 -12.50295 -12.24134 -11.53229 -11.37451 -11.22968 -11.02044 -10.65820 -10.55503 -10.37317 -9.82374 -8.20245 -6.31182 0.06484 0.28951 1.39593 1.40080 1.53243 2.40818 2.72638 3.12986 3.39368 3.62490 3.78196 3.94331 4.04162 4.06302 4.21978 4.33853 4.51825 4.52428 4.67983 4.71579 4.91799 4.98473 5.16710 5.23907 5.25445 5.37033 5.52723 5.72741 5.76497 5.86690 6.25649 6.85987 6.91915 6.97219 7.38158 8.91590 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044338 B = 0.004785 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.358473 B = 5850.588184 C = 6011.017141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.088 4.088 11 C -0.069 4.069 12 C -0.129 4.129 13 C 0.090 3.910 14 N -0.506 5.506 15 C 0.097 3.903 16 C -0.148 4.148 17 C 0.125 3.875 18 O -0.590 6.590 19 C -0.066 4.066 20 H 0.264 0.736 21 H -0.005 1.005 22 H -0.005 1.005 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.163 0.837 28 H 0.178 0.822 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.938 -16.529 5.014 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.015 4.015 10 C -0.126 4.126 11 C -0.107 4.107 12 C -0.131 4.131 13 C -0.066 4.066 14 N -0.214 5.214 15 C -0.061 4.061 16 C -0.150 4.150 17 C 0.047 3.953 18 O -0.399 6.399 19 C -0.092 4.092 20 H 0.073 0.927 21 H 0.013 0.987 22 H 0.013 0.987 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.181 0.819 28 H 0.195 0.805 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.253 0.747 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.775 -16.585 3.671 19.119 hybrid contribution -0.031 1.313 1.155 1.749 sum 8.744 -15.272 4.825 18.248 Atomic orbital electron populations 1.70095 1.07735 1.27702 1.51762 1.25954 0.95757 1.03266 0.94738 0.85426 0.79027 0.78900 0.77860 1.18766 1.20333 1.20246 1.21738 0.93466 0.92567 1.50440 0.92482 1.19045 0.94438 0.92859 0.95139 1.21394 0.97875 0.92870 1.00436 1.20536 0.95882 0.91025 1.03298 1.21045 0.99530 0.98052 0.94455 1.22917 0.93103 0.92243 0.98317 1.67723 1.10958 1.10583 1.32110 1.23074 0.97868 0.98139 0.86970 1.20966 0.99386 0.97428 0.97255 1.20916 0.93023 0.89447 0.91884 1.86508 1.54638 1.50001 1.48784 1.21685 0.94241 0.94590 0.98699 0.92749 0.98663 0.98664 0.93333 0.93301 0.90866 0.90616 0.81949 0.80488 0.89888 0.91272 0.74711 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.54 -31.24 9.11 25.60 0.23 -31.00 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.09 -3.61 5.13 30.59 0.16 -3.45 16 11 C -0.07 -2.32 5.37 29.84 0.16 -2.16 16 12 C -0.13 -3.88 5.15 -19.77 -0.10 -3.98 16 13 C 0.09 2.69 10.86 84.69 0.92 3.61 16 14 N -0.51 -14.87 10.36 -195.84 -2.03 -16.90 16 15 C 0.10 2.37 10.86 84.67 0.92 3.29 16 16 C -0.15 -3.49 5.53 -19.77 -0.11 -3.60 16 17 C 0.13 1.98 7.20 71.24 0.51 2.49 16 18 O -0.59 -10.00 13.64 -148.98 -2.03 -12.03 16 19 C -0.07 -1.79 9.55 22.47 0.21 -1.57 16 20 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 21 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 22 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.07 2.38 8.10 -2.39 -0.02 2.36 16 26 H 0.08 2.46 8.09 -2.39 -0.02 2.44 16 27 H 0.16 4.40 8.06 -2.91 -0.02 4.37 16 28 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16 29 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 30 H 0.07 0.93 8.10 -2.39 -0.02 0.92 16 31 H 0.40 2.50 9.12 -74.06 -0.68 1.83 16 32 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -70.08 281.63 2.19 -67.89 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.43 Total: 5.73 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: 3.52 Total: -34.57 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -1.74 Total: -73.48 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -2.03 Total: -12.03 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -70.08 2.19 -67.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.378 kcal (2) G-P(sol) polarization free energy of solvation -70.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds