Wall clock time and date at job start Sun Mar 29 2020 22:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47140 * 2 1 4 4 O 1.42906 * 109.46946 * 240.00446 * 2 1 3 5 5 C 1.52999 * 109.47649 * 120.00104 * 2 1 3 6 6 N 1.46494 * 109.47340 * 184.99775 * 5 2 1 7 7 C 1.38732 * 119.99701 * 180.27306 * 6 5 2 8 8 C 1.38747 * 120.30012 * 359.73150 * 7 6 5 9 9 C 1.38158 * 120.03286 * 180.02562 * 8 7 6 10 10 C 1.38902 * 120.62498 * 0.02562 * 9 8 7 11 11 C 1.36454 * 120.59507 * 359.97438 * 10 9 8 12 12 C 1.40726 * 119.94941 * 359.72604 * 11 10 9 13 13 C 1.41045 * 120.30387 * 180.26933 * 12 11 10 14 14 H 1.08008 * 119.99662 * 149.85766 * 13 12 11 15 15 C 1.39926 * 120.00552 * 329.87033 * 13 12 11 16 16 N 1.30877 * 120.00513 * 162.10141 * 15 13 12 17 17 Si 1.86801 * 119.99526 * 342.09469 * 15 13 12 18 18 H 1.48497 * 109.46961 * 95.40354 * 17 15 13 19 19 H 1.48509 * 109.46827 * 215.40093 * 17 15 13 20 20 H 1.48500 * 109.47232 * 335.39932 * 17 15 13 21 21 H 1.08999 * 109.46595 * 299.99591 * 1 2 3 22 22 H 1.08998 * 109.47046 * 59.99588 * 1 2 3 23 23 H 1.08999 * 109.47140 * 179.97438 * 1 2 3 24 24 H 0.96701 * 113.99544 * 299.99552 * 4 2 1 25 25 H 1.09003 * 109.46858 * 64.99585 * 5 2 1 26 26 H 1.09001 * 109.46803 * 305.00191 * 5 2 1 27 27 H 0.96999 * 120.00348 * 0.02562 * 6 5 2 28 28 H 1.08011 * 119.98365 * 0.02562 * 8 7 6 29 29 H 1.08001 * 119.68977 * 179.97438 * 9 8 7 30 30 H 1.08004 * 119.70351 * 179.97438 * 10 9 8 31 31 H 1.07998 * 120.01921 * 180.02562 * 11 10 9 32 32 H 0.96999 * 120.00674 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7212 1.2492 6 7 3.5001 -0.6179 1.3108 7 6 4.1933 -1.2045 2.3596 8 6 3.5097 -1.8858 3.3564 9 6 4.2056 -2.4675 4.3985 10 6 5.5902 -2.3779 4.4620 11 6 6.2883 -1.7141 3.4955 12 6 5.6049 -1.1178 2.4195 13 6 6.3194 -0.4347 1.4135 14 1 5.9354 -0.4044 0.4044 15 6 7.5257 0.2034 1.7225 16 7 8.3578 0.5287 0.7661 17 14 7.9484 0.5912 3.5002 18 1 8.7991 -0.4924 4.0544 19 1 8.6838 1.8798 3.5643 20 1 6.6982 0.6947 4.2950 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7210 -1.5952 -1.2330 25 1 1.7517 -1.7715 1.2055 26 1 1.6055 -0.2617 2.1369 27 1 3.9824 -0.1424 0.6164 28 1 2.4329 -1.9614 3.3175 29 1 3.6678 -2.9961 5.1717 30 1 6.1192 -2.8379 5.2837 31 1 7.3648 -1.6506 3.5539 32 1 9.1938 0.9714 0.9802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251967649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:25 Heat of formation + Delta-G solvation = -59.808079 kcal Electronic energy + Delta-G solvation = -14830.609562 eV Core-core repulsion = 12368.381318 eV Total energy + Delta-G solvation = -2462.228244 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.09365 -38.69536 -35.69105 -35.37191 -32.47109 -32.00272 -29.81559 -27.14050 -26.10605 -23.45912 -22.20295 -21.74504 -19.23560 -18.17359 -17.63290 -16.92131 -16.65001 -16.17122 -15.54437 -15.14881 -14.86165 -14.45730 -14.24282 -14.08871 -13.69976 -13.31321 -13.22811 -12.78735 -12.68536 -12.53251 -12.10585 -11.76832 -11.57010 -11.48326 -11.01846 -10.91563 -10.64655 -9.41891 -8.78591 -8.16942 -6.20227 0.87500 1.06356 1.28311 1.43960 1.50958 2.17681 2.71338 2.87380 3.54082 3.62804 3.82342 4.15596 4.25151 4.35614 4.50410 4.66016 4.69516 4.75118 4.87427 4.92822 5.13165 5.16778 5.26072 5.42155 5.44990 5.70219 5.87172 6.13396 6.24702 6.45323 6.60143 6.81653 6.91002 7.11217 7.17989 8.30816 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.009407 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.397967 B = 2975.751255 C = 3733.646796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 H 0.088 0.912 4 O -0.580 6.580 5 C 0.101 3.899 6 N -0.746 5.746 7 C 0.128 3.872 8 C -0.181 4.181 9 C -0.173 4.173 10 C -0.146 4.146 11 C -0.220 4.220 12 C 0.013 3.987 13 C -0.477 4.477 14 H 0.055 0.945 15 C 0.045 3.955 16 N -0.865 5.865 17 Si 0.963 3.037 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.257 1.257 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.387 0.613 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.393 0.607 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.193 -1.785 2.847 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.035 3.965 3 H 0.106 0.894 4 O -0.388 6.388 5 C -0.023 4.023 6 N -0.378 5.378 7 C 0.026 3.974 8 C -0.204 4.204 9 C -0.193 4.193 10 C -0.166 4.166 11 C -0.240 4.240 12 C 0.008 3.992 13 C -0.508 4.508 14 H 0.073 0.927 15 C -0.167 4.167 16 N -0.494 5.494 17 Si 0.788 3.212 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.181 1.181 21 H 0.098 0.902 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.236 0.764 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.227 0.773 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.134 0.866 31 H 0.107 0.893 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.920 -1.122 2.613 13.229 hybrid contribution 0.732 -0.035 0.131 0.745 sum -12.188 -1.157 2.744 12.546 Atomic orbital electron populations 1.22327 0.92913 1.03867 1.03647 1.22137 0.95041 0.96113 0.83255 0.89374 1.86597 1.78077 1.30159 1.43934 1.22068 0.80844 1.00493 0.98921 1.44206 1.05353 1.61654 1.26542 1.18169 0.90455 0.97890 0.90885 1.20503 0.98954 1.04471 0.96503 1.20694 0.93481 1.05173 0.99914 1.20506 0.95038 1.01966 0.99112 1.20661 0.97840 1.05906 0.99623 1.17575 0.91067 0.96235 0.94328 1.19045 1.04518 1.31138 0.96077 0.92670 1.26650 0.94282 0.93246 1.02525 1.69761 1.09058 1.34008 1.36567 0.85504 0.79219 0.77178 0.79251 1.19098 1.21108 1.18074 0.90213 0.91211 0.90715 0.76406 0.92046 0.91570 0.77283 0.85680 0.85291 0.86589 0.89276 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.53 71.98 0.69 -2.09 16 2 C 0.09 2.28 3.62 30.59 0.11 2.40 16 3 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 4 O -0.58 -16.04 13.29 -148.98 -1.98 -18.02 16 5 C 0.10 2.86 4.54 86.38 0.39 3.26 16 6 N -0.75 -29.84 5.58 -338.06 -1.89 -31.73 16 7 C 0.13 5.86 6.68 38.99 0.26 6.12 16 8 C -0.18 -7.15 9.30 22.37 0.21 -6.95 16 9 C -0.17 -6.70 10.03 22.41 0.22 -6.47 16 10 C -0.15 -6.24 9.97 22.01 0.22 -6.02 16 11 C -0.22 -10.89 7.10 22.46 0.16 -10.73 16 12 C 0.01 0.67 5.11 -21.17 -0.11 0.56 16 13 C -0.48 -27.29 8.91 23.37 0.21 -27.08 16 14 H 0.06 3.37 7.04 -2.91 -0.02 3.35 16 15 C 0.04 2.50 5.41 85.24 0.46 2.96 16 16 N -0.87 -49.77 13.93 21.83 0.30 -49.46 16 17 Si 0.96 45.58 24.52 68.60 1.68 47.26 16 18 H -0.27 -12.02 6.71 99.48 0.67 -11.36 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.26 -12.42 6.85 99.48 0.68 -11.74 16 21 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.39 7.83 9.05 -74.06 -0.67 7.16 16 25 H 0.06 1.60 7.94 -2.39 -0.02 1.58 16 26 H 0.07 1.74 7.95 -2.39 -0.02 1.72 16 27 H 0.39 17.37 6.79 -92.71 -0.63 16.74 16 28 H 0.13 4.09 6.73 -2.91 -0.02 4.07 16 29 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 30 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 31 H 0.09 4.49 4.75 -2.91 -0.01 4.47 16 32 H 0.29 15.03 8.30 -92.71 -0.77 14.26 16 Total: -1.00 -64.70 265.43 0.71 -63.99 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.23 Total: 32.02 kcal Atomic # 6 Polarization: -46.87 SS G_CDS: 2.82 Total: -44.05 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -1.58 Total: -81.20 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -1.98 Total: -18.02 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.68 Total: 47.26 kcal Total: -64.70 0.71 -63.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251967649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.180 kcal (2) G-P(sol) polarization free energy of solvation -64.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds