Wall clock time and date at job start Sun Mar 29 2020 22:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46714 * 2 1 4 4 H 1.09006 * 109.46534 * 179.81357 * 3 2 1 5 5 C 1.50695 * 109.47258 * 299.80746 * 3 2 1 6 6 H 1.08000 * 119.99516 * 116.02984 * 5 3 2 7 7 C 1.37875 * 120.00546 * 296.03606 * 5 3 2 8 8 N 1.31520 * 119.99616 * 353.68851 * 7 5 3 9 9 Si 1.86801 * 120.00301 * 173.68877 * 7 5 3 10 10 H 1.48504 * 109.47181 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46917 * 299.99896 * 9 7 5 12 12 H 1.48501 * 109.46823 * 59.99558 * 9 7 5 13 13 N 1.46893 * 109.47342 * 59.81511 * 3 2 1 14 14 C 1.46911 * 111.00227 * 88.46278 * 13 3 2 15 15 C 1.50698 * 109.47107 * 185.07825 * 14 13 3 16 16 C 1.38921 * 121.01255 * 269.71533 * 15 14 13 17 17 C 1.38566 * 117.97430 * 179.78846 * 16 15 14 18 18 N 1.31962 * 119.84370 * 0.49349 * 17 16 15 19 19 N 1.28350 * 122.18018 * 359.75009 * 18 17 16 20 20 C 1.31961 * 122.18215 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47360 * 185.06836 * 1 2 3 22 22 H 1.09005 * 109.47392 * 305.06731 * 1 2 3 23 23 H 1.08998 * 109.47269 * 65.06633 * 1 2 3 24 24 H 1.08998 * 109.47163 * 239.99609 * 2 1 3 25 25 H 1.09004 * 109.46754 * 119.99426 * 2 1 3 26 26 H 0.97000 * 120.00073 * 355.15665 * 8 7 5 27 27 H 1.00900 * 111.00336 * 212.41291 * 13 3 2 28 28 H 1.09000 * 109.46510 * 305.07424 * 14 13 3 29 29 H 1.08998 * 109.47072 * 65.07517 * 14 13 3 30 30 H 1.08003 * 121.00958 * 0.02656 * 16 15 14 31 31 H 1.07997 * 120.07972 * 180.21973 * 17 16 15 32 32 H 1.08004 * 120.07509 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4425 0.0033 5 6 1.5414 2.1515 -1.2328 6 1 0.8684 2.9908 -1.1380 7 6 1.9445 1.7288 -2.4817 8 7 2.8582 0.7896 -2.5948 9 14 1.1930 2.4900 -4.0131 10 1 1.7921 1.8670 -5.2207 11 1 -0.2739 2.2585 -4.0121 12 1 1.4636 3.9501 -4.0239 13 7 1.5466 2.1363 1.1971 14 6 2.4698 1.9594 2.3262 15 6 1.8728 2.5765 3.5646 16 6 2.1164 3.9046 3.8912 17 6 1.5322 4.4087 5.0421 18 7 0.7795 3.6270 5.7930 19 7 0.5584 2.3985 5.4939 20 6 1.0685 1.8350 4.4152 21 1 -0.3634 -1.0236 0.0908 22 1 -0.3634 0.5904 0.8411 23 1 -0.3634 0.4332 -0.9319 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.2990 0.4439 -1.8029 27 1 1.3892 3.1150 1.0088 28 1 2.6375 0.8957 2.4950 29 1 3.4186 2.4454 2.0992 30 1 2.7392 4.5264 3.2650 31 1 1.6959 5.4376 5.3263 32 1 0.8605 0.7981 4.1964 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:15 Heat of formation + Delta-G solvation = 44.966966 kcal Electronic energy + Delta-G solvation = -14705.348918 eV Core-core repulsion = 12279.956812 eV Total energy + Delta-G solvation = -2425.392106 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.88300 -36.92158 -34.32638 -32.51731 -31.90903 -30.53445 -26.98670 -24.77799 -24.46123 -23.54428 -22.08020 -19.41518 -17.54820 -17.29633 -16.55456 -15.68433 -14.94048 -14.38073 -14.20170 -13.89551 -13.66055 -13.32522 -12.85185 -12.35815 -11.98271 -11.62374 -11.24812 -10.87565 -10.78592 -10.27820 -10.17303 -10.10073 -10.05472 -9.84256 -9.76068 -9.61398 -8.60481 -8.45377 -7.62505 -6.45103 -4.18283 0.84319 1.00539 3.37104 3.39883 3.57699 3.63573 4.21168 4.42903 4.54655 4.60297 4.75559 4.93161 5.17745 5.27888 5.38779 5.65024 5.83140 5.90072 6.11741 6.19334 6.30898 6.37117 6.52340 6.84130 6.94122 7.15570 7.37225 7.45426 7.70400 7.90101 8.32306 8.42229 8.74451 8.76403 9.51953 10.91048 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043345 B = 0.006447 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.821033 B = 4341.934717 C = 4588.931035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.205 3.795 4 H -0.004 1.004 5 C -0.598 4.598 6 H 0.053 0.947 7 C 0.026 3.974 8 N -0.907 5.907 9 Si 1.064 2.936 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.673 5.673 14 C 0.093 3.907 15 C -0.061 4.061 16 C -0.122 4.122 17 C 0.038 3.962 18 N -0.257 5.257 19 N -0.250 5.250 20 C 0.058 3.942 21 H 0.018 0.982 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.019 0.981 26 H 0.271 0.729 27 H 0.337 0.663 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.146 0.854 31 H 0.168 0.832 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 3.965 9.357 10.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 C 0.097 3.903 4 H 0.013 0.987 5 C -0.637 4.637 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.543 5.543 9 Si 0.892 3.108 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.216 1.216 13 N -0.304 5.304 14 C -0.037 4.037 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.126 4.126 18 N -0.099 5.099 19 N -0.091 5.091 20 C -0.106 4.106 21 H 0.037 0.963 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.164 0.836 31 H 0.185 0.815 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.376 3.177 9.250 9.876 hybrid contribution 1.694 0.873 0.027 1.906 sum 0.318 4.050 9.277 10.127 Atomic orbital electron populations 1.21424 0.96439 0.97740 1.02169 1.21509 0.96388 0.98065 0.98647 1.19272 0.92627 0.91588 0.86804 0.98692 1.21950 1.31956 1.18007 0.91756 0.92836 1.25702 0.95551 0.95482 1.01163 1.70803 1.23454 1.26364 1.33694 0.83614 0.75944 0.75497 0.75742 1.20774 1.21301 1.21551 1.60656 1.45655 1.17839 1.06243 1.20932 0.93873 1.00391 0.88460 1.21306 0.94951 0.94219 0.96789 1.22361 0.99512 0.95725 0.97528 1.24226 0.94243 1.01641 0.92472 1.72937 1.11774 0.99197 1.26015 1.72979 1.16702 1.04219 1.15167 1.24242 0.93053 1.02230 0.91090 0.96278 0.92985 0.92562 0.91875 0.96225 0.91802 0.84578 0.89982 0.94350 0.83586 0.81455 0.81186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.48 37.16 0.35 -2.19 16 2 C -0.11 -2.39 5.51 -26.73 -0.15 -2.54 16 3 C 0.20 4.70 1.94 -68.87 -0.13 4.56 16 4 H 0.00 -0.11 7.22 -51.93 -0.38 -0.49 16 5 C -0.60 -15.43 7.35 -34.44 -0.25 -15.68 16 6 H 0.05 1.39 7.61 -52.49 -0.40 0.99 16 7 C 0.03 0.70 5.24 -17.82 -0.09 0.60 16 8 N -0.91 -25.74 12.83 55.43 0.71 -25.03 16 9 Si 1.06 24.03 29.91 -169.99 -5.08 18.95 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 13 N -0.67 -12.82 5.41 -109.22 -0.59 -13.41 16 14 C 0.09 1.46 5.64 -4.97 -0.03 1.43 16 15 C -0.06 -0.85 5.48 -104.25 -0.57 -1.42 16 16 C -0.12 -1.48 9.93 -39.21 -0.39 -1.87 16 17 C 0.04 0.46 11.31 -17.37 -0.20 0.26 16 18 N -0.26 -3.90 11.50 30.55 0.35 -3.55 16 19 N -0.25 -3.97 11.50 30.55 0.35 -3.62 16 20 C 0.06 0.84 11.03 -17.38 -0.19 0.65 16 21 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.05 1.06 7.44 -51.93 -0.39 0.68 16 23 H 0.06 1.29 7.41 -51.93 -0.38 0.91 16 24 H 0.06 1.56 6.18 -51.93 -0.32 1.24 16 25 H 0.02 0.39 7.63 -51.93 -0.40 0.00 16 26 H 0.27 7.63 6.06 -40.82 -0.25 7.38 16 27 H 0.34 6.46 8.21 -39.29 -0.32 6.14 16 28 H 0.08 1.26 7.56 -51.93 -0.39 0.87 16 29 H 0.04 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.17 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 271.16 15.07 4.09 4.09 Total: -1.00 -29.03 271.16 -5.96 -34.99 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.13 Total: 3.78 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -1.65 Total: -16.19 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.82 Total: -45.61 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.08 Total: 18.95 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.03 -5.96 -34.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.957 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds