Wall clock time and date at job start Sun Mar 29 2020 22:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46714 * 2 1 4 4 H 1.09006 * 109.46534 * 179.81357 * 3 2 1 5 5 C 1.50695 * 109.47258 * 299.80746 * 3 2 1 6 6 H 1.08000 * 119.99516 * 116.02984 * 5 3 2 7 7 C 1.37875 * 120.00546 * 296.03606 * 5 3 2 8 8 N 1.31520 * 119.99616 * 353.68851 * 7 5 3 9 9 Si 1.86801 * 120.00301 * 173.68877 * 7 5 3 10 10 H 1.48504 * 109.47181 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46917 * 299.99896 * 9 7 5 12 12 H 1.48501 * 109.46823 * 59.99558 * 9 7 5 13 13 N 1.46893 * 109.47342 * 59.81511 * 3 2 1 14 14 C 1.46911 * 111.00227 * 88.46278 * 13 3 2 15 15 C 1.50698 * 109.47107 * 185.07825 * 14 13 3 16 16 C 1.38921 * 121.01255 * 269.71533 * 15 14 13 17 17 C 1.38566 * 117.97430 * 179.78846 * 16 15 14 18 18 N 1.31962 * 119.84370 * 0.49349 * 17 16 15 19 19 N 1.28350 * 122.18018 * 359.75009 * 18 17 16 20 20 C 1.31961 * 122.18215 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47360 * 185.06836 * 1 2 3 22 22 H 1.09005 * 109.47392 * 305.06731 * 1 2 3 23 23 H 1.08998 * 109.47269 * 65.06633 * 1 2 3 24 24 H 1.08998 * 109.47163 * 239.99609 * 2 1 3 25 25 H 1.09004 * 109.46754 * 119.99426 * 2 1 3 26 26 H 0.97000 * 120.00073 * 355.15665 * 8 7 5 27 27 H 1.00900 * 111.00336 * 212.41291 * 13 3 2 28 28 H 1.09000 * 109.46510 * 305.07424 * 14 13 3 29 29 H 1.08998 * 109.47072 * 65.07517 * 14 13 3 30 30 H 1.08003 * 121.00958 * 0.02656 * 16 15 14 31 31 H 1.07997 * 120.07972 * 180.21973 * 17 16 15 32 32 H 1.08004 * 120.07509 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4425 0.0033 5 6 1.5414 2.1515 -1.2328 6 1 0.8684 2.9908 -1.1380 7 6 1.9445 1.7288 -2.4817 8 7 2.8582 0.7896 -2.5948 9 14 1.1930 2.4900 -4.0131 10 1 1.7921 1.8670 -5.2207 11 1 -0.2739 2.2585 -4.0121 12 1 1.4636 3.9501 -4.0239 13 7 1.5466 2.1363 1.1971 14 6 2.4698 1.9594 2.3262 15 6 1.8728 2.5765 3.5646 16 6 2.1164 3.9046 3.8912 17 6 1.5322 4.4087 5.0421 18 7 0.7795 3.6270 5.7930 19 7 0.5584 2.3985 5.4939 20 6 1.0685 1.8350 4.4152 21 1 -0.3634 -1.0236 0.0908 22 1 -0.3634 0.5904 0.8411 23 1 -0.3634 0.4332 -0.9319 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.2990 0.4439 -1.8029 27 1 1.3892 3.1150 1.0088 28 1 2.6375 0.8957 2.4950 29 1 3.4186 2.4454 2.0992 30 1 2.7392 4.5264 3.2650 31 1 1.6959 5.4376 5.3263 32 1 0.8605 0.7981 4.1964 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:15 Heat of formation + Delta-G solvation = 25.836343 kcal Electronic energy + Delta-G solvation = -14706.178484 eV Core-core repulsion = 12279.956812 eV Total energy + Delta-G solvation = -2426.221672 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.94978 -38.55655 -35.78698 -33.72110 -33.44309 -32.15110 -28.54020 -26.41753 -25.52971 -25.32044 -23.30828 -21.22006 -19.15954 -18.54394 -17.67785 -16.82708 -16.28588 -15.97884 -15.65621 -15.59236 -15.24447 -14.48288 -14.22362 -13.98150 -13.64961 -13.25940 -12.96775 -12.63312 -12.07130 -11.96370 -11.85093 -11.75596 -11.59845 -11.10203 -10.96288 -10.73376 -10.54095 -10.40960 -9.21047 -8.55188 -6.28140 -0.22469 0.00217 1.55732 1.61462 1.80278 2.55142 2.60428 3.21674 3.22472 3.38314 3.55935 3.75280 3.77259 3.93053 4.38596 4.43044 4.55680 4.58120 4.60691 4.77048 4.82911 5.04543 5.09207 5.20308 5.30246 5.38654 5.54969 5.69769 5.87257 6.07526 6.45779 6.56605 6.77093 7.49527 7.70676 8.81478 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043345 B = 0.006447 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.821033 B = 4341.934717 C = 4588.931035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C 0.210 3.790 4 H -0.029 1.029 5 C -0.600 4.600 6 H 0.050 0.950 7 C -0.021 4.021 8 N -0.934 5.934 9 Si 1.105 2.895 10 H -0.289 1.289 11 H -0.276 1.276 12 H -0.272 1.272 13 N -0.670 5.670 14 C 0.100 3.900 15 C -0.071 4.071 16 C -0.111 4.111 17 C 0.045 3.955 18 N -0.284 5.284 19 N -0.278 5.278 20 C 0.055 3.945 21 H 0.040 0.960 22 H 0.058 0.942 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.039 0.961 26 H 0.260 0.740 27 H 0.336 0.664 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.173 0.827 31 H 0.208 0.792 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 5.193 9.953 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.143 4.143 3 C 0.101 3.899 4 H -0.012 1.012 5 C -0.639 4.639 6 H 0.068 0.932 7 C -0.220 4.220 8 N -0.572 5.572 9 Si 0.928 3.072 10 H -0.215 1.215 11 H -0.201 1.201 12 H -0.197 1.197 13 N -0.301 5.301 14 C -0.029 4.029 15 C -0.083 4.083 16 C -0.140 4.140 17 C -0.119 4.119 18 N -0.125 5.125 19 N -0.118 5.118 20 C -0.111 4.111 21 H 0.059 0.941 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.190 0.810 31 H 0.224 0.776 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.726 4.411 9.886 10.962 hybrid contribution 1.832 0.545 -0.079 1.913 sum 0.105 4.956 9.807 10.988 Atomic orbital electron populations 1.21313 0.95348 0.99036 1.01063 1.21414 0.97224 0.97484 0.98144 1.19066 0.91021 0.92202 0.87612 1.01184 1.22250 1.31026 1.17675 0.92912 0.93208 1.26886 0.95457 0.95419 1.04247 1.70903 1.25021 1.28023 1.33231 0.83073 0.75777 0.75688 0.72660 1.21458 1.20128 1.19733 1.60540 1.46487 1.17480 1.05560 1.20858 0.93469 1.00831 0.87781 1.21137 0.95715 0.95193 0.96227 1.22699 0.98740 0.95063 0.97532 1.24810 0.92594 1.02878 0.91625 1.72853 1.13030 0.99357 1.27250 1.72936 1.17881 1.04985 1.15994 1.24402 0.92964 1.02794 0.90909 0.94140 0.92282 0.94965 0.94779 0.94265 0.92918 0.84630 0.89923 0.93793 0.80984 0.77570 0.80292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.54 9.48 71.98 0.68 -3.85 16 2 C -0.10 -4.60 5.51 30.59 0.17 -4.43 16 3 C 0.21 9.57 1.94 44.17 0.09 9.66 16 4 H -0.03 -1.47 7.22 -2.38 -0.02 -1.49 16 5 C -0.60 -30.82 7.35 25.60 0.19 -30.63 16 6 H 0.05 2.55 7.61 -2.91 -0.02 2.53 16 7 C -0.02 -1.10 5.24 84.65 0.44 -0.66 16 8 N -0.93 -53.78 12.83 21.45 0.28 -53.50 16 9 Si 1.10 48.02 29.91 68.60 2.05 50.07 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 13 N -0.67 -24.68 5.41 -499.46 -2.70 -27.39 16 14 C 0.10 2.96 5.64 85.55 0.48 3.44 16 15 C -0.07 -1.84 5.48 -19.62 -0.11 -1.95 16 16 C -0.11 -2.36 9.93 22.51 0.22 -2.14 16 17 C 0.05 0.96 11.31 84.75 0.96 1.91 16 18 N -0.28 -8.11 11.50 -57.27 -0.66 -8.77 16 19 N -0.28 -8.53 11.50 -57.27 -0.66 -9.19 16 20 C 0.05 1.50 11.03 84.75 0.93 2.43 16 21 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.06 2.32 7.44 -2.38 -0.02 2.30 16 23 H 0.03 1.45 7.41 -2.39 -0.02 1.43 16 24 H 0.03 1.70 6.18 -2.39 -0.01 1.68 16 25 H 0.04 1.55 7.63 -2.38 -0.02 1.53 16 26 H 0.26 15.07 6.06 -92.71 -0.56 14.51 16 27 H 0.34 12.40 8.21 -89.69 -0.74 11.67 16 28 H 0.08 2.43 7.56 -2.39 -0.02 2.41 16 29 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 30 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.21 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.18 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -62.11 271.16 2.95 -59.16 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.59 Total: 15.82 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 4.06 Total: -26.21 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -3.75 Total: -98.84 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.05 Total: 50.07 kcal Total: -62.11 2.95 -59.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.996 kcal (2) G-P(sol) polarization free energy of solvation -62.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds