Wall clock time and date at job start Sun Mar 29 2020 22:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47169 * 2 1 4 4 H 1.09000 * 109.47133 * 177.97009 * 3 2 1 5 5 C 1.50703 * 109.46904 * 57.96812 * 3 2 1 6 6 H 1.07997 * 120.00008 * 240.00509 * 5 3 2 7 7 C 1.37875 * 120.00128 * 59.99966 * 5 3 2 8 8 N 1.31521 * 120.00084 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00316 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46670 * 90.00153 * 9 7 5 11 11 H 1.48502 * 109.47388 * 209.99908 * 9 7 5 12 12 H 1.48494 * 109.47318 * 330.00434 * 9 7 5 13 13 N 1.46898 * 109.47242 * 297.97079 * 3 2 1 14 14 C 1.46895 * 110.99781 * 273.74836 * 13 3 2 15 15 C 1.50703 * 109.47130 * 174.87476 * 14 13 3 16 16 C 1.38922 * 121.01455 * 269.71466 * 15 14 13 17 17 C 1.38563 * 117.97208 * 179.78683 * 16 15 14 18 18 N 1.31958 * 119.85048 * 0.49599 * 17 16 15 19 19 N 1.28353 * 122.17664 * 359.74301 * 18 17 16 20 20 C 1.31954 * 122.18155 * 0.02562 * 19 18 17 21 21 H 1.08993 * 109.47315 * 54.45048 * 1 2 3 22 22 H 1.09002 * 109.47314 * 294.44331 * 1 2 3 23 23 H 1.09001 * 109.46853 * 174.44705 * 1 2 3 24 24 H 1.09001 * 109.47182 * 120.00234 * 2 1 3 25 25 H 1.08999 * 109.47238 * 239.99954 * 2 1 3 26 26 H 0.96996 * 120.00212 * 179.97438 * 8 7 5 27 27 H 1.00895 * 111.00086 * 149.78854 * 13 3 2 28 28 H 1.09002 * 109.47243 * 294.87248 * 14 13 3 29 29 H 1.09001 * 109.47481 * 54.87217 * 14 13 3 30 30 H 1.08000 * 121.00948 * 0.02562 * 16 15 14 31 31 H 1.08004 * 120.07401 * 180.21889 * 17 16 15 32 32 H 1.08000 * 120.08132 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0364 5 6 1.4969 2.1673 1.2045 6 1 0.8798 3.0440 1.0744 7 6 1.7878 1.7111 2.4727 8 7 2.5397 0.6437 2.6312 9 14 1.1153 2.6099 3.9658 10 1 -0.2060 2.0399 4.3329 11 1 2.0560 2.4520 5.1039 12 1 0.9610 4.0521 3.6475 13 7 1.5908 2.1207 -1.2232 14 6 2.5279 1.8859 -2.3297 15 6 1.9730 2.4887 -3.5945 16 6 1.1642 1.7467 -4.4462 17 6 0.6847 2.3651 -5.5897 18 7 1.0095 3.6186 -5.8439 19 7 1.7607 4.3026 -5.0595 20 6 2.2589 3.7980 -3.9467 21 1 -0.3633 0.5974 -0.8361 22 1 -0.3634 0.4252 0.9356 23 1 -0.3633 -1.0229 -0.0994 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 2.7447 0.3230 3.5234 27 1 1.4613 3.1083 -1.0623 28 1 3.4874 2.3480 -2.0976 29 1 2.6653 0.8134 -2.4682 30 1 0.9137 0.7204 -4.2217 31 1 0.0502 1.8210 -6.2737 32 1 2.8872 4.4045 -3.3112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:19 Heat of formation + Delta-G solvation = 48.241756 kcal Electronic energy + Delta-G solvation = -14676.786157 eV Core-core repulsion = 12251.536056 eV Total energy + Delta-G solvation = -2425.250101 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82277 -36.68711 -34.09952 -32.47204 -31.88627 -30.40686 -27.10268 -25.09173 -24.40556 -23.24950 -22.06176 -19.14443 -17.48448 -16.79858 -16.38648 -15.53283 -15.03889 -14.76169 -14.21076 -13.63984 -13.53118 -13.19362 -12.62828 -12.32251 -11.88512 -11.57919 -11.01684 -10.87790 -10.75390 -10.50902 -10.26801 -9.99827 -9.92785 -9.69654 -9.55624 -9.43461 -8.89229 -8.56567 -7.46778 -6.11157 -4.17107 0.93289 1.04773 3.24366 3.31605 3.34162 3.69304 4.24980 4.33144 4.63286 4.66223 4.85332 5.02506 5.20027 5.36433 5.45410 5.67417 5.94926 6.03636 6.21730 6.35405 6.41864 6.60032 6.74365 7.11267 7.13866 7.37209 7.62182 7.67414 7.72683 8.10152 8.21846 8.48797 8.80895 8.90076 9.48274 10.94844 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043654 B = 0.006431 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.249713 B = 4352.592708 C = 4625.814514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.004 0.996 5 C -0.516 4.516 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.094 3.906 15 C -0.061 4.061 16 C -0.105 4.105 17 C 0.037 3.963 18 N -0.259 5.259 19 N -0.250 5.250 20 C 0.043 3.957 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.013 0.987 24 H 0.087 0.913 25 H 0.010 0.990 26 H 0.262 0.738 27 H 0.334 0.666 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.168 0.832 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 0.026 -9.741 9.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.021 0.979 5 C -0.555 4.555 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.311 5.311 14 C -0.036 4.036 15 C -0.073 4.073 16 C -0.135 4.135 17 C -0.127 4.127 18 N -0.101 5.101 19 N -0.091 5.091 20 C -0.122 4.122 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.032 0.968 24 H 0.105 0.895 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.151 0.849 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.167 0.833 31 H 0.185 0.815 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.269 0.712 -10.788 10.885 hybrid contribution 0.484 -0.391 2.185 2.272 sum -0.785 0.321 -8.603 8.644 Atomic orbital electron populations 1.21442 0.97432 0.97200 1.01634 1.21442 0.95161 0.98059 0.99415 1.19173 0.93517 0.91662 0.84723 0.97863 1.21146 1.31936 1.12126 0.90244 0.92243 1.24871 0.94954 0.94994 0.98891 1.69877 1.37135 1.23072 1.22563 0.86559 0.78823 0.80101 0.82320 1.20582 1.21250 1.19934 1.60758 1.46533 1.16629 1.07149 1.20912 0.94061 1.00467 0.88147 1.21342 0.94704 0.94433 0.96813 1.22327 0.95246 1.02166 0.93763 1.24258 0.98250 0.93588 0.96616 1.72926 1.07938 1.05879 1.23354 1.72952 1.04959 1.29067 1.02105 1.24262 0.98344 0.94054 0.95537 0.93542 0.92873 0.96762 0.89491 0.97156 0.92844 0.84898 0.94265 0.90016 0.83305 0.81481 0.81483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.46 37.15 0.35 -2.21 16 2 C -0.10 -2.32 5.58 -26.73 -0.15 -2.47 16 3 C 0.22 5.00 2.30 -68.86 -0.16 4.84 16 4 H 0.00 0.09 7.84 -51.93 -0.41 -0.31 16 5 C -0.52 -13.18 7.34 -34.44 -0.25 -13.43 16 6 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.15 11.34 55.43 0.63 -23.52 16 9 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.68 -12.96 5.50 -109.22 -0.60 -13.56 16 14 C 0.09 1.48 5.64 -4.98 -0.03 1.45 16 15 C -0.06 -0.86 5.49 -104.24 -0.57 -1.43 16 16 C -0.11 -1.33 9.93 -39.21 -0.39 -1.72 16 17 C 0.04 0.45 11.31 -17.38 -0.20 0.26 16 18 N -0.26 -3.96 11.50 30.55 0.35 -3.60 16 19 N -0.25 -3.96 11.50 30.55 0.35 -3.61 16 20 C 0.04 0.60 11.03 -17.38 -0.19 0.41 16 21 H 0.05 0.95 7.50 -51.93 -0.39 0.56 16 22 H 0.05 1.24 7.37 -51.93 -0.38 0.85 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.09 2.22 6.13 -51.93 -0.32 1.90 16 25 H 0.01 0.21 7.43 -51.93 -0.39 -0.18 16 26 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.33 6.37 8.24 -39.29 -0.32 6.05 16 28 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 29 H 0.08 1.28 7.36 -51.93 -0.38 0.89 16 30 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.17 1.45 8.06 -52.48 -0.42 1.02 16 32 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 272.28 15.07 4.10 4.10 Total: -1.00 -28.11 272.28 -6.10 -34.22 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.24 Total: 3.15 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -1.68 Total: -12.69 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.73 Total: -44.29 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.11 -6.10 -34.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.457 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds