Wall clock time and date at job start Sun Mar 29 2020 22:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47121 * 239.99720 * 2 1 3 5 5 H 1.07996 * 120.00373 * 240.00281 * 4 2 1 6 6 C 1.37877 * 119.99682 * 60.00337 * 4 2 1 7 7 N 1.31519 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00107 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47101 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47244 * 119.99846 * 8 6 4 11 11 H 1.48493 * 109.47383 * 240.00241 * 8 6 4 12 12 N 1.46506 * 109.47021 * 120.00396 * 2 1 3 13 13 C 1.46498 * 120.00239 * 59.71865 * 12 2 1 14 14 C 1.34777 * 119.99873 * 240.00060 * 12 2 1 15 15 O 1.21615 * 119.99846 * 359.97438 * 14 12 2 16 16 C 1.43195 * 120.00075 * 179.97438 * 14 12 2 17 17 C 4.88637 * 115.86664 * 106.71139 * 2 1 3 18 18 C 6.32549 * 114.49194 * 109.88850 * 2 1 3 19 19 C 1.52993 * 117.50338 * 315.64461 * 18 17 16 20 20 C 1.52999 * 60.00367 * 252.51241 * 19 18 17 21 21 H 1.08995 * 109.47505 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47000 * 300.00487 * 1 2 3 23 23 H 1.09002 * 109.46917 * 59.99707 * 1 2 3 24 24 H 0.97000 * 119.99941 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46661 * 89.99886 * 13 12 2 26 26 H 1.08993 * 109.47575 * 210.00600 * 13 12 2 27 27 H 1.09001 * 109.46870 * 330.00556 * 13 12 2 28 28 H 1.09008 * 115.55116 * 101.35918 * 18 17 16 29 29 H 1.08998 * 117.50105 * 0.02562 * 19 18 17 30 30 H 1.09005 * 117.50102 * 145.02439 * 19 18 17 31 31 H 1.08998 * 117.49804 * 252.51036 * 20 19 18 32 32 H 1.08999 * 117.49837 * 107.48740 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8160 12 7 2.0183 -0.6907 1.1962 13 6 1.6593 -2.0915 1.4311 14 6 2.7931 -0.0358 2.0834 15 8 3.0873 1.1284 1.8907 16 6 3.2700 -0.7107 3.2528 17 6 3.6618 -1.2643 4.2111 18 6 4.1523 -1.9582 5.4130 19 6 3.1483 -2.2188 6.5376 20 6 4.2315 -1.1524 6.7112 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7096 1.1619 -3.4844 25 1 2.4070 -2.7396 0.9740 26 1 1.6203 -2.2817 2.5036 27 1 0.6835 -2.2953 0.9902 28 1 4.9216 -2.7110 5.2402 29 1 2.1243 -1.8768 6.3874 30 1 3.2567 -3.1433 7.1049 31 1 5.0525 -1.3752 7.3926 32 1 3.9203 -0.1084 6.6752 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293073371.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:06 Heat of formation + Delta-G solvation = 23.647333 kcal Electronic energy + Delta-G solvation = -14372.869123 eV Core-core repulsion = 11914.259777 eV Total energy + Delta-G solvation = -2458.609346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.83319 -38.46937 -37.28645 -34.98165 -33.69681 -31.30250 -27.86393 -27.34540 -25.93430 -23.51669 -23.26352 -21.33190 -18.98217 -18.36433 -17.79934 -17.30888 -16.49328 -16.27335 -15.78559 -14.99534 -14.56793 -14.21014 -13.57999 -13.48860 -13.33387 -13.00372 -12.90482 -12.77926 -12.67418 -12.39351 -12.26862 -12.19976 -12.14130 -11.33142 -11.22975 -11.05865 -10.64012 -10.54997 -9.51662 -8.17869 -6.34974 0.51248 1.16089 1.40992 1.42679 1.54426 2.08918 2.40372 2.48345 2.99570 3.10334 3.13244 3.85202 3.99305 4.06714 4.30357 4.46974 4.59034 4.72042 4.79263 4.84204 4.91848 4.97763 4.99620 5.12206 5.24868 5.38932 5.51749 5.60493 5.95308 6.08851 6.17173 6.58341 6.70631 7.09916 7.37116 8.87405 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048065 B = 0.005796 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.409381 B = 4829.345732 C = 4943.047146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.258 3.742 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.271 1.271 11 H -0.284 1.284 12 N -0.583 5.583 13 C 0.087 3.913 14 C 0.608 3.392 15 O -0.593 6.593 16 C -0.255 4.255 17 C -0.032 4.032 18 C -0.083 4.083 19 C -0.144 4.144 20 C -0.157 4.157 21 H 0.052 0.948 22 H 0.022 0.978 23 H 0.073 0.927 24 H 0.267 0.733 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.810 -10.632 15.541 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.157 3.843 3 H 0.032 0.968 4 C -0.580 4.580 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.795 3.205 9 H -0.191 1.191 10 H -0.196 1.196 11 H -0.210 1.210 12 N -0.312 5.312 13 C -0.055 4.055 14 C 0.397 3.603 15 O -0.477 6.477 16 C -0.258 4.258 17 C -0.035 4.035 18 C -0.101 4.101 19 C -0.181 4.181 20 C -0.194 4.194 21 H 0.071 0.929 22 H 0.041 0.959 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.180 0.820 29 H 0.109 0.891 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.820 -9.943 15.252 18.424 hybrid contribution 0.187 0.250 -1.309 1.346 sum 3.007 -9.692 13.943 17.245 Atomic orbital electron populations 1.21897 0.96362 1.00547 1.00345 1.18746 0.92213 0.92380 0.80934 0.96827 1.21545 1.32315 1.13214 0.90954 0.92174 1.25752 0.94925 0.95620 1.02022 1.70023 1.37101 1.23725 1.24603 0.85332 0.78276 0.78386 0.78553 1.19060 1.19642 1.20999 1.48173 1.47466 1.13667 1.21873 1.21773 1.01975 0.80041 1.01671 1.15298 0.78862 0.84857 0.81267 1.90744 1.60643 1.18517 1.77796 1.20510 1.05933 1.02219 0.97155 1.22161 0.92951 0.95116 0.93241 1.19309 1.05141 1.03196 0.82436 1.23241 0.95114 1.02130 0.97608 1.23246 1.02812 0.97327 0.95990 0.92921 0.95929 0.90790 0.92422 0.92426 0.90033 0.89856 0.82038 0.89106 0.84309 0.84591 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.58 8.94 71.98 0.64 -5.93 16 2 C 0.26 14.11 2.64 44.24 0.12 14.23 16 3 H 0.01 0.89 6.90 -2.39 -0.02 0.87 16 4 C -0.54 -30.37 8.37 25.60 0.21 -30.16 16 5 H 0.06 3.30 7.65 -2.91 -0.02 3.27 16 6 C 0.02 0.93 5.30 84.65 0.45 1.37 16 7 N -0.92 -53.23 11.32 21.45 0.24 -52.99 16 8 Si 0.97 43.53 29.54 68.60 2.03 45.55 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 N -0.58 -27.37 2.75 -835.79 -2.30 -29.67 16 13 C 0.09 3.10 9.51 127.77 1.21 4.32 16 14 C 0.61 29.56 7.53 85.49 0.64 30.20 16 15 O -0.59 -34.17 16.41 -4.08 -0.07 -34.24 16 16 C -0.26 -9.86 11.70 30.01 0.35 -9.50 16 17 C -0.03 -0.94 13.47 31.12 0.42 -0.52 16 18 C -0.08 -1.46 6.22 -12.60 -0.08 -1.54 16 19 C -0.14 -1.80 10.21 30.59 0.31 -1.48 16 20 C -0.16 -2.14 10.21 30.60 0.31 -1.83 16 21 H 0.05 2.33 6.65 -2.39 -0.02 2.31 16 22 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 24 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.08 2.41 6.88 -2.39 -0.02 2.39 16 27 H 0.08 2.82 6.41 -2.39 -0.02 2.81 16 28 H 0.16 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.14 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -72.56 281.31 5.61 -66.94 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.11 Total: 5.24 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 4.60 Total: -0.85 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -2.06 Total: -82.66 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.07 Total: -34.24 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -72.56 5.61 -66.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293073371.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.592 kcal (2) G-P(sol) polarization free energy of solvation -72.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds