Wall clock time and date at job start Sun Mar 29 2020 22:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21615 * 119.99855 * 0.02562 * 14 12 2 16 16 C 1.43201 * 120.00282 * 179.97438 * 14 12 2 17 17 C 4.88634 * 115.86688 * 253.29620 * 2 1 3 18 18 C 6.32548 * 114.49339 * 250.11873 * 2 1 3 19 19 C 1.53000 * 117.49803 * 322.81764 * 18 17 16 20 20 C 1.52994 * 60.00154 * 252.51191 * 19 18 17 21 21 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 26 26 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 27 27 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 28 28 H 1.08997 * 115.55357 * 108.52537 * 18 17 16 29 29 H 1.09002 * 117.50036 * 359.97438 * 19 18 17 30 30 H 1.09008 * 117.49971 * 145.02106 * 19 18 17 31 31 H 1.09002 * 117.49739 * 252.51315 * 20 19 18 32 32 H 1.08992 * 117.50476 * 107.48878 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0873 1.1288 -1.8907 16 6 3.2709 -0.7106 -3.2524 17 6 3.6618 -1.2637 -4.2112 18 6 4.1525 -1.9575 -5.4132 19 6 3.8918 -3.4616 -5.5165 20 6 5.3053 -2.9477 -5.2361 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 0.7089 1.1611 3.4845 25 1 0.7376 -2.1442 -1.9996 26 1 2.4629 -2.5817 -1.9866 27 1 1.5295 -2.5968 -0.4711 28 1 4.1247 -1.3771 -6.3353 29 1 3.3574 -3.9375 -4.6943 30 1 3.6923 -3.8710 -6.5069 31 1 6.0358 -3.0189 -6.0420 32 1 5.7005 -3.0853 -4.2297 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293073372.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:10 Heat of formation + Delta-G solvation = 23.039047 kcal Electronic energy + Delta-G solvation = -14422.915892 eV Core-core repulsion = 11964.280169 eV Total energy + Delta-G solvation = -2458.635723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.82903 -38.46628 -37.27990 -34.97344 -33.69096 -31.30970 -27.83455 -27.34931 -25.93244 -23.50689 -23.24973 -21.34738 -19.01139 -18.38570 -17.70923 -17.30160 -16.45349 -16.35057 -15.77629 -14.96603 -14.52433 -14.14066 -13.66988 -13.48591 -13.22672 -12.97119 -12.94112 -12.79257 -12.73420 -12.37670 -12.27768 -12.22019 -12.13436 -11.32262 -11.22923 -11.03068 -10.67448 -10.54450 -9.51263 -8.17405 -6.34768 0.49456 1.20843 1.41960 1.44708 1.52349 2.09788 2.39686 2.43887 3.02231 3.10652 3.13703 3.85204 4.00763 4.08291 4.30587 4.47276 4.61803 4.72437 4.80558 4.85991 4.89818 4.98674 5.00200 5.12960 5.26254 5.40863 5.48617 5.60408 5.95460 6.09255 6.17447 6.58239 6.70257 7.10212 7.37052 8.87539 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038262 B = 0.006264 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.613166 B = 4468.817089 C = 4732.782024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.259 3.741 3 H 0.013 0.987 4 C -0.545 4.545 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.970 3.030 9 H -0.281 1.281 10 H -0.261 1.261 11 H -0.278 1.278 12 N -0.583 5.583 13 C 0.085 3.915 14 C 0.608 3.392 15 O -0.594 6.594 16 C -0.256 4.256 17 C -0.032 4.032 18 C -0.087 4.087 19 C -0.144 4.144 20 C -0.153 4.153 21 H 0.050 0.950 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.267 0.733 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.158 0.842 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 -12.136 -14.245 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.031 0.969 4 C -0.583 4.583 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.794 3.206 9 H -0.207 1.207 10 H -0.185 1.185 11 H -0.204 1.204 12 N -0.312 5.312 13 C -0.057 4.057 14 C 0.397 3.603 15 O -0.477 6.477 16 C -0.259 4.259 17 C -0.035 4.035 18 C -0.104 4.104 19 C -0.181 4.181 20 C -0.190 4.190 21 H 0.069 0.931 22 H 0.092 0.908 23 H 0.039 0.961 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.175 0.825 29 H 0.113 0.887 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.797 -11.450 -13.946 18.439 hybrid contribution 0.120 0.358 1.183 1.242 sum 3.917 -11.092 -12.763 17.357 Atomic orbital electron populations 1.21877 0.96403 1.00462 1.00242 1.18728 0.92167 0.92390 0.80909 0.96890 1.21493 1.32491 1.13374 0.90922 0.91986 1.25759 0.94889 0.95611 1.02029 1.70013 1.36954 1.23696 1.24730 0.85440 0.78327 0.79008 0.77824 1.20656 1.18500 1.20362 1.48165 1.47527 1.13574 1.21891 1.21802 1.00863 0.80179 1.02858 1.15305 0.78891 0.84920 0.81178 1.90745 1.60733 1.18573 1.77693 1.20508 1.06381 1.01781 0.97189 1.22152 0.93019 0.95371 0.92912 1.19293 1.06665 0.92668 0.91774 1.23263 0.98417 0.90966 1.05441 1.23236 0.92082 0.99161 1.04479 0.93122 0.90823 0.96068 0.92410 0.91376 0.90625 0.90075 0.82478 0.88668 0.84507 0.84679 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 8.97 71.98 0.65 -5.88 16 2 C 0.26 14.16 2.64 44.24 0.12 14.27 16 3 H 0.01 0.85 6.90 -2.39 -0.02 0.83 16 4 C -0.54 -30.34 7.99 25.60 0.20 -30.13 16 5 H 0.06 3.34 7.33 -2.91 -0.02 3.32 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -53.19 11.32 21.45 0.24 -52.95 16 8 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.58 -27.32 2.75 -835.78 -2.30 -29.62 16 13 C 0.09 3.00 9.24 127.77 1.18 4.18 16 14 C 0.61 29.59 7.53 85.49 0.64 30.23 16 15 O -0.59 -34.28 16.41 -4.08 -0.07 -34.34 16 16 C -0.26 -9.89 11.70 30.02 0.35 -9.54 16 17 C -0.03 -0.94 13.47 31.12 0.42 -0.52 16 18 C -0.09 -1.52 6.22 -12.60 -0.08 -1.60 16 19 C -0.14 -1.75 10.21 30.59 0.31 -1.44 16 20 C -0.15 -2.02 10.21 30.59 0.31 -1.71 16 21 H 0.05 2.26 7.67 -2.39 -0.02 2.24 16 22 H 0.07 4.00 6.07 -2.39 -0.01 3.98 16 23 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.08 2.30 6.89 -2.38 -0.02 2.28 16 27 H 0.08 2.92 7.02 -2.39 -0.02 2.90 16 28 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.14 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -72.35 282.00 5.57 -66.78 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.11 Total: 5.58 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 4.56 Total: -0.73 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.06 Total: -82.57 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.07 Total: -34.34 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -72.35 5.57 -66.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293073372.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.822 kcal (2) G-P(sol) polarization free energy of solvation -72.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds