Wall clock time and date at job start Sun Mar 29 2020 22:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47156 * 2 1 4 4 C 1.36936 * 119.99899 * 94.58531 * 3 2 1 5 5 H 1.08000 * 119.99753 * 37.76065 * 4 3 2 6 6 C 1.38814 * 119.99738 * 217.49129 * 4 3 2 7 7 N 1.31614 * 119.99681 * 212.06979 * 6 4 3 8 8 Si 1.86797 * 120.00298 * 32.06738 * 6 4 3 9 9 H 1.48504 * 109.47043 * 86.01385 * 8 6 4 10 10 H 1.48494 * 109.47235 * 206.01614 * 8 6 4 11 11 H 1.48504 * 109.47032 * 326.01595 * 8 6 4 12 12 C 1.46493 * 119.99982 * 274.58457 * 3 2 1 13 13 C 1.50701 * 109.47320 * 275.36763 * 12 3 2 14 14 C 1.38611 * 120.07803 * 94.99969 * 13 12 3 15 15 C 1.38886 * 117.96711 * 180.02562 * 14 13 12 16 16 C 1.38599 * 117.97164 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.07934 * 179.97438 * 16 15 14 18 18 N 1.31936 * 119.84692 * 0.02562 * 16 15 14 19 19 N 1.28351 * 122.18328 * 359.71105 * 18 16 15 20 20 H 1.09000 * 109.46816 * 304.92172 * 1 2 3 21 21 H 1.08996 * 109.47349 * 64.92456 * 1 2 3 22 22 H 1.08998 * 109.46870 * 184.92227 * 1 2 3 23 23 H 1.09003 * 109.47402 * 240.00429 * 2 1 3 24 24 H 1.09002 * 109.47387 * 119.99981 * 2 1 3 25 25 H 0.97002 * 119.99914 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47051 * 35.36914 * 12 3 2 27 27 H 1.08999 * 109.47620 * 155.36592 * 12 3 2 28 28 H 1.08004 * 121.01104 * 359.97438 * 14 13 12 29 29 H 1.07999 * 121.01380 * 179.97438 * 15 14 13 30 30 H 1.08996 * 109.47464 * 89.99951 * 17 16 15 31 31 H 1.09004 * 109.47137 * 210.00420 * 17 16 15 32 32 H 1.09007 * 109.47100 * 329.99671 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3360 1.9952 1.1821 5 1 2.8139 1.4333 1.9710 6 6 2.0487 3.3410 1.3643 7 7 2.8303 4.0844 2.1183 8 14 0.5529 4.0969 0.5394 9 1 -0.6415 3.8940 1.3983 10 1 0.7789 5.5511 0.3412 11 1 0.3321 3.4463 -0.7772 12 6 2.1669 2.1056 -1.2646 13 6 3.5039 1.7773 -1.8776 14 6 3.6053 0.7704 -2.8249 15 6 4.8587 0.5042 -3.3607 16 6 5.9304 1.2620 -2.9155 17 6 7.3114 1.0128 -3.4645 18 7 5.7388 2.2014 -2.0091 19 7 4.5797 2.4508 -1.5175 20 1 -0.3633 0.5883 0.8426 21 1 -0.3634 0.4355 -0.9308 22 1 -0.3633 -1.0239 0.0882 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.6298 5.0250 2.2454 26 1 1.3712 1.8099 -1.9484 27 1 2.1061 3.1779 -1.0785 28 1 2.7363 0.2096 -3.1361 29 1 4.9941 -0.2698 -4.1016 30 1 7.4710 1.6368 -4.3438 31 1 8.0540 1.2582 -2.7052 32 1 7.4084 -0.0370 -3.7415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308610161.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:52 Heat of formation + Delta-G solvation = 78.226078 kcal Electronic energy + Delta-G solvation = -15074.131209 eV Core-core repulsion = 12650.181326 eV Total energy + Delta-G solvation = -2423.949883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.45859 -36.41774 -33.49397 -32.71949 -31.93145 -29.89527 -28.07912 -25.88432 -23.78754 -23.54071 -22.04253 -20.13142 -17.07128 -16.95792 -15.72138 -15.16223 -14.80022 -14.63095 -14.25136 -13.45537 -13.14550 -12.87953 -12.68478 -12.43308 -12.25700 -12.08374 -11.76519 -11.39068 -10.78887 -10.67877 -10.48377 -10.11292 -9.98969 -9.76277 -9.58339 -8.97542 -8.89387 -8.44008 -6.92373 -6.03353 -3.34425 1.32490 1.44568 3.37321 3.49682 3.51345 4.06078 4.50265 4.56714 4.84832 4.98140 5.04181 5.15660 5.34314 5.37433 5.53376 5.62354 5.70755 5.82803 6.00221 6.07546 6.17755 6.20450 6.26182 6.42018 6.55957 6.72234 6.74487 6.80887 6.98471 8.01215 8.40145 8.94993 9.43915 9.71367 10.09869 11.11612 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.010018 C = 0.008503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.751165 B = 2794.249000 C = 3292.099041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 N -0.586 5.586 4 C -0.281 4.281 5 H 0.074 0.926 6 C 0.055 3.945 7 N -0.867 5.867 8 Si 0.852 3.148 9 H -0.287 1.287 10 H -0.294 1.294 11 H -0.262 1.262 12 C 0.191 3.809 13 C 0.062 3.938 14 C -0.119 4.119 15 C -0.129 4.129 16 C 0.037 3.963 17 C -0.093 4.093 18 N -0.246 5.246 19 N -0.207 5.207 20 H 0.058 0.942 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.033 0.967 24 H 0.055 0.945 25 H 0.265 0.735 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -8.159 -12.146 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 N -0.306 5.306 4 C -0.409 4.409 5 H 0.091 0.909 6 C -0.149 4.149 7 N -0.504 5.504 8 Si 0.679 3.321 9 H -0.215 1.215 10 H -0.220 1.220 11 H -0.187 1.187 12 C 0.062 3.938 13 C -0.085 4.085 14 C -0.149 4.149 15 C -0.158 4.158 16 C -0.108 4.108 17 C -0.151 4.151 18 N -0.089 5.089 19 N -0.050 5.050 20 H 0.077 0.923 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.157 0.843 29 H 0.156 0.844 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.668 -6.784 -11.055 13.077 hybrid contribution -1.476 -0.726 -1.258 2.071 sum 0.192 -7.510 -12.314 14.424 Atomic orbital electron populations 1.22329 0.99369 0.99716 1.01534 1.20921 0.91901 0.86367 0.99116 1.44062 1.73788 1.11326 1.01473 1.18573 1.35638 0.93905 0.92804 0.90869 1.25404 0.97047 0.96248 0.96155 1.70055 1.34005 1.06307 1.40063 0.87425 0.86334 0.77957 0.80423 1.21455 1.22041 1.18694 1.20390 0.87016 0.98640 0.87706 1.24416 1.00134 0.92562 0.91389 1.22299 0.98260 0.97844 0.96539 1.22098 0.93137 1.00107 1.00462 1.22772 0.97241 0.94683 0.96121 1.20558 0.91550 1.01802 1.01224 1.73074 1.16190 1.13431 1.06170 1.73190 0.93906 1.21389 1.16480 0.92287 0.94005 0.93983 0.94831 0.92666 0.92562 0.92578 0.90239 0.84258 0.84426 0.90663 0.90376 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.24 37.16 0.38 -2.55 16 2 C 0.14 2.76 6.41 -4.04 -0.03 2.73 16 3 N -0.59 -13.80 2.03 -174.61 -0.36 -14.16 16 4 C -0.28 -7.90 9.78 -15.06 -0.15 -8.04 16 5 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 6 C 0.06 1.60 5.04 -17.43 -0.09 1.51 16 7 N -0.87 -26.67 13.97 55.49 0.78 -25.90 16 8 Si 0.85 21.40 26.49 -169.99 -4.50 16.90 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 11 H -0.26 -6.08 5.49 56.52 0.31 -5.77 16 12 C 0.19 4.18 4.19 -5.20 -0.02 4.16 16 13 C 0.06 1.30 6.44 -82.41 -0.53 0.77 16 14 C -0.12 -1.93 9.79 -39.20 -0.38 -2.32 16 15 C -0.13 -1.85 9.87 -39.21 -0.39 -2.24 16 16 C 0.04 0.60 6.86 -82.42 -0.57 0.04 16 17 C -0.09 -1.07 10.20 36.00 0.37 -0.70 16 18 N -0.25 -5.21 11.43 33.59 0.38 -4.83 16 19 N -0.21 -4.93 11.43 33.60 0.38 -4.55 16 20 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 24 H 0.05 1.09 8.00 -51.93 -0.42 0.68 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.06 1.06 8.01 -51.93 -0.42 0.64 16 27 H 0.08 1.94 4.44 -51.93 -0.23 1.71 16 28 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 29 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 LS Contribution 273.65 15.07 4.12 4.12 Total: -1.00 -32.79 273.65 -5.10 -37.90 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.51 Total: -2.84 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.40 Total: -6.64 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 1.19 Total: -49.43 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.50 Total: 16.90 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.79 -5.10 -37.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308610161.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.122 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds