Wall clock time and date at job start Sun Mar 29 2020 22:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47156 * 2 1 4 4 C 1.36936 * 119.99899 * 94.58531 * 3 2 1 5 5 H 1.08000 * 119.99753 * 37.76065 * 4 3 2 6 6 C 1.38814 * 119.99738 * 217.49129 * 4 3 2 7 7 N 1.31614 * 119.99681 * 212.06979 * 6 4 3 8 8 Si 1.86797 * 120.00298 * 32.06738 * 6 4 3 9 9 H 1.48504 * 109.47043 * 86.01385 * 8 6 4 10 10 H 1.48494 * 109.47235 * 206.01614 * 8 6 4 11 11 H 1.48504 * 109.47032 * 326.01595 * 8 6 4 12 12 C 1.46493 * 119.99982 * 274.58457 * 3 2 1 13 13 C 1.50701 * 109.47320 * 275.36763 * 12 3 2 14 14 C 1.38611 * 120.07803 * 94.99969 * 13 12 3 15 15 C 1.38886 * 117.96711 * 180.02562 * 14 13 12 16 16 C 1.38599 * 117.97164 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.07934 * 179.97438 * 16 15 14 18 18 N 1.31936 * 119.84692 * 0.02562 * 16 15 14 19 19 N 1.28351 * 122.18328 * 359.71105 * 18 16 15 20 20 H 1.09000 * 109.46816 * 304.92172 * 1 2 3 21 21 H 1.08996 * 109.47349 * 64.92456 * 1 2 3 22 22 H 1.08998 * 109.46870 * 184.92227 * 1 2 3 23 23 H 1.09003 * 109.47402 * 240.00429 * 2 1 3 24 24 H 1.09002 * 109.47387 * 119.99981 * 2 1 3 25 25 H 0.97002 * 119.99914 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47051 * 35.36914 * 12 3 2 27 27 H 1.08999 * 109.47620 * 155.36592 * 12 3 2 28 28 H 1.08004 * 121.01104 * 359.97438 * 14 13 12 29 29 H 1.07999 * 121.01380 * 179.97438 * 15 14 13 30 30 H 1.08996 * 109.47464 * 89.99951 * 17 16 15 31 31 H 1.09004 * 109.47137 * 210.00420 * 17 16 15 32 32 H 1.09007 * 109.47100 * 329.99671 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3360 1.9952 1.1821 5 1 2.8139 1.4333 1.9710 6 6 2.0487 3.3410 1.3643 7 7 2.8303 4.0844 2.1183 8 14 0.5529 4.0969 0.5394 9 1 -0.6415 3.8940 1.3983 10 1 0.7789 5.5511 0.3412 11 1 0.3321 3.4463 -0.7772 12 6 2.1669 2.1056 -1.2646 13 6 3.5039 1.7773 -1.8776 14 6 3.6053 0.7704 -2.8249 15 6 4.8587 0.5042 -3.3607 16 6 5.9304 1.2620 -2.9155 17 6 7.3114 1.0128 -3.4645 18 7 5.7388 2.2014 -2.0091 19 7 4.5797 2.4508 -1.5175 20 1 -0.3633 0.5883 0.8426 21 1 -0.3634 0.4355 -0.9308 22 1 -0.3633 -1.0239 0.0882 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.6298 5.0250 2.2454 26 1 1.3712 1.8099 -1.9484 27 1 2.1061 3.1779 -1.0785 28 1 2.7363 0.2096 -3.1361 29 1 4.9941 -0.2698 -4.1016 30 1 7.4710 1.6368 -4.3438 31 1 8.0540 1.2582 -2.7052 32 1 7.4084 -0.0370 -3.7415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308610161.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:51 Heat of formation + Delta-G solvation = 54.922084 kcal Electronic energy + Delta-G solvation = -15075.141746 eV Core-core repulsion = 12650.181326 eV Total energy + Delta-G solvation = -2424.960420 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.85161 -38.13343 -34.82398 -34.22143 -33.84234 -31.39286 -29.48268 -27.49792 -25.58912 -24.86140 -23.39150 -21.83242 -19.04497 -18.37186 -17.26232 -16.65245 -16.35632 -16.15921 -15.73078 -15.16097 -14.85969 -14.13490 -14.01386 -13.92791 -13.57600 -13.42070 -13.13080 -12.94172 -12.66282 -12.36452 -12.22419 -11.76097 -11.60344 -11.43343 -11.01914 -10.56904 -10.40335 -10.30068 -8.83323 -8.22906 -5.51474 0.05189 0.13162 1.36417 1.43399 1.50855 2.46360 2.63107 3.04699 3.23955 3.52190 3.69868 3.82813 3.91490 4.22516 4.31535 4.40055 4.57527 4.69447 4.75416 4.78687 4.82640 4.88630 4.96890 5.08533 5.13443 5.26797 5.40109 5.54460 5.57359 5.93020 6.19155 6.98555 7.64280 8.02390 8.05913 8.97350 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.010018 C = 0.008503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.751165 B = 2794.249000 C = 3292.099041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 N -0.598 5.598 4 C -0.270 4.270 5 H 0.024 0.976 6 C -0.003 4.003 7 N -0.928 5.928 8 Si 0.919 3.081 9 H -0.287 1.287 10 H -0.305 1.305 11 H -0.227 1.227 12 C 0.189 3.811 13 C 0.040 3.960 14 C -0.112 4.112 15 C -0.111 4.111 16 C 0.037 3.963 17 C -0.091 4.091 18 N -0.298 5.298 19 N -0.276 5.276 20 H 0.030 0.970 21 H 0.056 0.944 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.037 0.963 25 H 0.261 0.739 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.183 0.817 29 H 0.196 0.804 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 -10.902 -16.131 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 N -0.321 5.321 4 C -0.399 4.399 5 H 0.042 0.958 6 C -0.202 4.202 7 N -0.569 5.569 8 Si 0.745 3.255 9 H -0.214 1.214 10 H -0.232 1.232 11 H -0.150 1.150 12 C 0.062 3.938 13 C -0.109 4.109 14 C -0.141 4.141 15 C -0.140 4.140 16 C -0.109 4.109 17 C -0.149 4.149 18 N -0.139 5.139 19 N -0.116 5.116 20 H 0.049 0.951 21 H 0.075 0.925 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.200 0.800 29 H 0.213 0.787 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.681 -9.553 -15.074 17.859 hybrid contribution -0.974 -0.044 -0.151 0.986 sum -0.293 -9.597 -15.225 18.000 Atomic orbital electron populations 1.22211 0.97205 1.01521 1.01081 1.21088 0.93548 0.84069 0.99944 1.44110 1.74792 1.12596 1.00555 1.18354 1.33994 0.93665 0.93908 0.95809 1.26030 0.99517 0.96913 0.97699 1.70186 1.36332 1.06531 1.43875 0.86333 0.81762 0.76428 0.80989 1.21449 1.23224 1.14972 1.20356 0.89214 0.96673 0.87567 1.24280 0.98651 0.94417 0.93574 1.22689 1.00726 0.96098 0.94592 1.22720 0.91386 0.99840 1.00010 1.23650 1.00244 0.92931 0.94091 1.20742 0.88279 1.04593 1.01320 1.72942 1.15601 1.16470 1.08895 1.73018 0.95468 1.24194 1.18957 0.95073 0.92492 0.90609 0.91442 0.94398 0.92974 0.88537 0.93617 0.79994 0.78673 0.88635 0.91444 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 10.24 71.98 0.74 -4.28 16 2 C 0.14 5.04 6.41 86.38 0.55 5.59 16 3 N -0.60 -27.96 2.03 -706.34 -1.44 -29.39 16 4 C -0.27 -15.84 9.78 84.03 0.82 -15.02 16 5 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 6 C 0.00 -0.16 5.04 84.86 0.43 0.27 16 7 N -0.93 -60.87 13.97 21.65 0.30 -60.57 16 8 Si 0.92 45.70 26.49 68.60 1.82 47.51 16 9 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 11 H -0.23 -9.83 5.49 99.48 0.55 -9.28 16 12 C 0.19 8.01 4.19 85.63 0.36 8.37 16 13 C 0.04 1.61 6.44 42.63 0.27 1.88 16 14 C -0.11 -3.12 9.79 22.51 0.22 -2.90 16 15 C -0.11 -2.60 9.87 22.51 0.22 -2.38 16 16 C 0.04 1.12 6.86 42.63 0.29 1.41 16 17 C -0.09 -1.75 10.20 71.23 0.73 -1.02 16 18 N -0.30 -12.72 11.43 -47.63 -0.54 -13.27 16 19 N -0.28 -13.42 11.43 -47.62 -0.54 -13.97 16 20 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.07 2.00 8.04 -2.39 -0.02 1.98 16 24 H 0.04 1.49 8.00 -2.39 -0.02 1.47 16 25 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 26 H 0.10 3.22 8.01 -2.39 -0.02 3.20 16 27 H 0.05 2.22 4.44 -2.39 -0.01 2.21 16 28 H 0.18 3.42 8.06 -2.91 -0.02 3.39 16 29 H 0.20 2.33 8.06 -2.91 -0.02 2.30 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 1.30 8.09 -2.38 -0.02 1.28 16 Total: -1.00 -80.08 273.65 5.16 -74.92 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: 0.93 Total: 2.84 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.63 Total: -8.08 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -2.22 Total: -117.20 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.82 Total: 47.51 kcal Total: -80.08 5.16 -74.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308610161.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.842 kcal (2) G-P(sol) polarization free energy of solvation -80.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds