Wall clock time and date at job start Sun Mar 29 2020 22:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48498 * 109.46880 * 270.00272 * 3 2 1 5 5 H 1.48502 * 109.46978 * 30.00353 * 3 2 1 6 6 H 1.48504 * 109.46834 * 150.00158 * 3 2 1 7 7 C 1.37877 * 119.99414 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00423 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99592 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47003 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.46900 * 111.00063 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47203 * 179.97438 * 12 11 10 14 14 C 1.38343 * 120.45127 * 260.00256 * 13 12 11 15 15 C 1.38835 * 118.50488 * 180.23310 * 14 13 12 16 16 C 1.38074 * 119.32720 * 359.51840 * 15 14 13 17 17 N 1.31939 * 120.85509 * 0.49190 * 16 15 14 18 18 C 1.32434 * 121.62312 * 359.74082 * 17 16 15 19 19 N 1.39003 * 119.70816 * 179.97438 * 18 17 16 20 20 H 0.96997 * 119.99492 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46647 * 60.00087 * 9 7 2 22 22 H 1.09002 * 109.46851 * 300.00035 * 9 7 2 23 23 H 1.08999 * 109.47435 * 59.99833 * 10 9 7 24 24 H 1.09008 * 109.46762 * 299.99833 * 10 9 7 25 25 H 1.00903 * 111.00232 * 56.04238 * 11 10 9 26 26 H 1.09000 * 109.47163 * 59.99667 * 12 11 10 27 27 H 1.08996 * 109.47447 * 299.99962 * 12 11 10 28 28 H 1.08002 * 120.74485 * 359.95074 * 14 13 12 29 29 H 1.08002 * 120.33784 * 179.75184 * 15 14 13 30 30 H 1.07994 * 119.57184 * 180.25856 * 16 15 14 31 31 H 0.96995 * 119.99947 * 180.02562 * 19 18 17 32 32 H 0.96999 * 119.99590 * 0.02944 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0023 11 7 5.4904 -2.6367 -0.0022 12 6 6.0168 -4.0081 -0.0027 13 6 7.5234 -3.9680 -0.0033 14 6 8.2293 -4.1560 -1.1781 15 6 9.6163 -4.1158 -1.1313 16 6 10.2457 -3.8810 0.0750 17 7 9.5467 -3.7051 1.1800 18 6 8.2228 -3.7409 1.1774 19 7 7.5262 -3.5509 2.3651 20 1 -0.4849 0.8401 0.0004 21 1 3.8752 -0.6805 0.8889 22 1 3.8745 -0.6801 -0.8912 23 1 3.6578 -3.1499 -0.8924 24 1 3.6584 -3.1510 0.8876 25 1 5.8521 -2.1112 0.7796 26 1 5.6673 -4.5312 -0.8929 27 1 5.6674 -4.5318 0.8870 28 1 7.7132 -4.3347 -2.1098 29 1 10.1969 -4.2628 -2.0300 30 1 11.3243 -3.8447 0.1151 31 1 6.5566 -3.5766 2.3681 32 1 8.0097 -3.3925 3.1909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308687431.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:11 Heat of formation + Delta-G solvation = 29.042782 kcal Electronic energy + Delta-G solvation = -14254.646285 eV Core-core repulsion = 11828.563654 eV Total energy + Delta-G solvation = -2426.082630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.30207 -36.40821 -34.66739 -33.34606 -32.19985 -30.20333 -28.98682 -25.81715 -23.44286 -22.97856 -21.57077 -20.40253 -17.66194 -17.44937 -16.78803 -15.76146 -15.03236 -14.92760 -14.53281 -14.33933 -14.03301 -13.46243 -13.14632 -12.87834 -12.62079 -12.12018 -11.66619 -11.32941 -11.02420 -10.90752 -10.20735 -9.97455 -9.81780 -9.57466 -9.42076 -9.25168 -8.55664 -8.05405 -7.81387 -6.06625 -4.05297 1.24840 1.48750 3.31771 3.38701 3.43448 3.47006 3.88577 4.44533 4.57296 4.76175 4.84383 5.02947 5.09064 5.28072 5.36383 5.47481 5.68487 5.82099 6.06769 6.13619 6.18459 6.39510 6.59570 6.71982 7.06113 7.18128 7.33648 7.39736 7.53345 7.68015 7.84279 8.20163 8.50214 8.97092 9.55802 11.06643 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046094 B = 0.005234 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.311471 B = 5348.119423 C = 5400.730413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.072 3.928 11 N -0.689 5.689 12 C 0.106 3.894 13 C -0.191 4.191 14 C -0.019 4.019 15 C -0.236 4.236 16 C 0.140 3.860 17 N -0.549 5.549 18 C 0.408 3.592 19 N -0.852 5.852 20 H 0.263 0.737 21 H 0.013 0.987 22 H 0.021 0.979 23 H 0.067 0.933 24 H 0.023 0.977 25 H 0.334 0.666 26 H 0.081 0.919 27 H 0.031 0.969 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.152 0.848 31 H 0.407 0.593 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.910 -8.503 0.889 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.056 4.056 11 N -0.321 5.321 12 C -0.024 4.024 13 C -0.199 4.199 14 C -0.045 4.045 15 C -0.259 4.259 16 C -0.017 4.017 17 N -0.266 5.266 18 C 0.170 3.830 19 N -0.397 5.397 20 H 0.073 0.927 21 H 0.031 0.969 22 H 0.040 0.960 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.151 0.849 26 H 0.100 0.900 27 H 0.048 0.952 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.169 0.831 31 H 0.238 0.762 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 18.211 -8.177 0.962 19.985 hybrid contribution -0.470 0.576 0.402 0.845 sum 17.740 -7.601 1.364 19.348 Atomic orbital electron populations 1.69917 1.06318 1.26956 1.51038 1.25002 0.94722 0.99205 0.94423 0.86740 0.80244 0.83428 0.78626 1.20201 1.21468 1.19041 1.21058 0.89306 0.94533 1.51168 0.91076 1.19550 0.96706 0.91751 0.96777 1.22011 0.83701 1.00235 0.99671 1.60668 1.09861 1.11733 1.49804 1.20665 0.89055 0.91561 1.01077 1.20156 0.96539 1.10154 0.93034 1.21249 0.93683 0.92363 0.97225 1.21797 0.95155 1.09393 0.99523 1.22322 0.99391 0.92713 0.87271 1.67157 1.05916 1.21752 1.31825 1.18205 0.88284 0.90085 0.86384 1.42315 1.09070 1.80827 1.07460 0.92694 0.96911 0.96046 0.91485 0.95907 0.84882 0.90028 0.95154 0.84916 0.85297 0.83098 0.76184 0.76851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.41 5.62 -3.83 -0.02 1.38 16 11 N -0.69 -11.43 6.49 -115.06 -0.75 -12.18 16 12 C 0.11 1.45 5.15 -4.97 -0.03 1.42 16 13 C -0.19 -2.53 5.43 -104.26 -0.57 -3.10 16 14 C -0.02 -0.22 9.81 -39.32 -0.39 -0.61 16 15 C -0.24 -2.50 10.10 -39.42 -0.40 -2.90 16 16 C 0.14 1.58 11.17 -17.57 -0.20 1.38 16 17 N -0.55 -7.36 10.39 -12.44 -0.13 -7.49 16 18 C 0.41 5.43 7.73 -155.01 -1.20 4.23 16 19 N -0.85 -9.42 8.90 31.13 0.28 -9.14 16 20 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 21 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 22 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 23 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 24 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 25 H 0.33 5.40 8.20 -39.29 -0.32 5.08 16 26 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 27 H 0.03 0.39 7.11 -51.93 -0.37 0.02 16 28 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.41 4.27 6.62 -40.82 -0.27 4.00 16 32 H 0.40 3.84 8.95 -40.82 -0.37 3.48 16 LS Contribution 272.85 15.07 4.11 4.11 Total: -1.00 -31.97 272.85 -7.94 -39.90 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.21 Total: 6.46 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -3.34 Total: -11.86 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.17 Total: -55.91 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.97 -7.94 -39.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308687431.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.945 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds