Wall clock time and date at job start Sun Mar 29 2020 22:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48498 * 109.46880 * 270.00272 * 3 2 1 5 5 H 1.48502 * 109.46978 * 30.00353 * 3 2 1 6 6 H 1.48504 * 109.46834 * 150.00158 * 3 2 1 7 7 C 1.37877 * 119.99414 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00423 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99592 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47003 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.46900 * 111.00063 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47203 * 179.97438 * 12 11 10 14 14 C 1.38343 * 120.45127 * 260.00256 * 13 12 11 15 15 C 1.38835 * 118.50488 * 180.23310 * 14 13 12 16 16 C 1.38074 * 119.32720 * 359.51840 * 15 14 13 17 17 N 1.31939 * 120.85509 * 0.49190 * 16 15 14 18 18 C 1.32434 * 121.62312 * 359.74082 * 17 16 15 19 19 N 1.39003 * 119.70816 * 179.97438 * 18 17 16 20 20 H 0.96997 * 119.99492 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46647 * 60.00087 * 9 7 2 22 22 H 1.09002 * 109.46851 * 300.00035 * 9 7 2 23 23 H 1.08999 * 109.47435 * 59.99833 * 10 9 7 24 24 H 1.09008 * 109.46762 * 299.99833 * 10 9 7 25 25 H 1.00903 * 111.00232 * 56.04238 * 11 10 9 26 26 H 1.09000 * 109.47163 * 59.99667 * 12 11 10 27 27 H 1.08996 * 109.47447 * 299.99962 * 12 11 10 28 28 H 1.08002 * 120.74485 * 359.95074 * 14 13 12 29 29 H 1.08002 * 120.33784 * 179.75184 * 15 14 13 30 30 H 1.07994 * 119.57184 * 180.25856 * 16 15 14 31 31 H 0.96995 * 119.99947 * 180.02562 * 19 18 17 32 32 H 0.96999 * 119.99590 * 0.02944 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0023 11 7 5.4904 -2.6367 -0.0022 12 6 6.0168 -4.0081 -0.0027 13 6 7.5234 -3.9680 -0.0033 14 6 8.2293 -4.1560 -1.1781 15 6 9.6163 -4.1158 -1.1313 16 6 10.2457 -3.8810 0.0750 17 7 9.5467 -3.7051 1.1800 18 6 8.2228 -3.7409 1.1774 19 7 7.5262 -3.5509 2.3651 20 1 -0.4849 0.8401 0.0004 21 1 3.8752 -0.6805 0.8889 22 1 3.8745 -0.6801 -0.8912 23 1 3.6578 -3.1499 -0.8924 24 1 3.6584 -3.1510 0.8876 25 1 5.8521 -2.1112 0.7796 26 1 5.6673 -4.5312 -0.8929 27 1 5.6674 -4.5318 0.8870 28 1 7.7132 -4.3347 -2.1098 29 1 10.1969 -4.2628 -2.0300 30 1 11.3243 -3.8447 0.1151 31 1 6.5566 -3.5766 2.3681 32 1 8.0097 -3.3925 3.1909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308687431.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:11 Heat of formation + Delta-G solvation = 5.453712 kcal Electronic energy + Delta-G solvation = -14255.669183 eV Core-core repulsion = 11828.563654 eV Total energy + Delta-G solvation = -2427.105529 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.20224 -37.73064 -35.68203 -35.04940 -33.66226 -31.66810 -30.14162 -27.21502 -25.02070 -23.89320 -22.59428 -22.18536 -18.96967 -18.52719 -18.32852 -16.97550 -16.34265 -16.08437 -15.90139 -15.54295 -15.19793 -14.73539 -14.67317 -14.49635 -13.82035 -13.55910 -13.00598 -12.94979 -12.63260 -11.99736 -11.76025 -11.74957 -11.69282 -11.42297 -10.77857 -10.56309 -10.35211 -9.36373 -8.71255 -8.30743 -6.35064 0.34932 0.60870 1.37016 1.37281 1.49894 2.35594 2.62431 2.95133 3.05133 3.46674 3.73527 3.94985 4.07541 4.23901 4.38926 4.47005 4.54029 4.68039 4.78966 4.88820 4.95489 5.23030 5.27104 5.47009 5.50940 5.61836 5.78110 6.08170 6.23556 6.30950 6.43811 6.58355 6.73419 7.30104 7.33164 8.85843 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046094 B = 0.005234 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.311471 B = 5348.119423 C = 5400.730413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.532 4.532 8 H 0.035 0.965 9 C -0.005 4.005 10 C 0.085 3.915 11 N -0.690 5.690 12 C 0.111 3.889 13 C -0.210 4.210 14 C -0.027 4.027 15 C -0.233 4.233 16 C 0.133 3.867 17 N -0.571 5.571 18 C 0.393 3.607 19 N -0.848 5.848 20 H 0.267 0.733 21 H 0.018 0.982 22 H 0.019 0.981 23 H 0.061 0.939 24 H 0.024 0.976 25 H 0.337 0.663 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.146 0.854 29 H 0.158 0.842 30 H 0.181 0.819 31 H 0.409 0.591 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.294 -8.128 0.590 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.571 4.571 8 H 0.053 0.947 9 C -0.043 4.043 10 C -0.044 4.044 11 N -0.321 5.321 12 C -0.018 4.018 13 C -0.218 4.218 14 C -0.053 4.053 15 C -0.255 4.255 16 C -0.023 4.023 17 N -0.289 5.289 18 C 0.156 3.844 19 N -0.393 5.393 20 H 0.076 0.924 21 H 0.036 0.964 22 H 0.037 0.963 23 H 0.079 0.921 24 H 0.042 0.958 25 H 0.155 0.845 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.163 0.837 29 H 0.176 0.824 30 H 0.198 0.802 31 H 0.240 0.760 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 20.613 -7.821 0.674 22.057 hybrid contribution -1.185 0.360 0.473 1.326 sum 19.428 -7.462 1.148 20.843 Atomic orbital electron populations 1.70062 1.08237 1.28202 1.52559 1.25958 0.95566 1.03394 0.94039 0.85635 0.79347 0.78347 0.79127 1.19384 1.20917 1.17291 1.21404 0.91843 0.93273 1.50575 0.94672 1.19444 0.93611 0.94613 0.96646 1.21681 0.85823 0.97350 0.99508 1.60572 1.07590 1.13835 1.50099 1.20642 0.89674 0.89821 1.01661 1.20138 0.95969 1.11935 0.93746 1.21556 0.94566 0.91873 0.97337 1.22119 0.94815 1.08132 1.00459 1.22919 1.00824 0.91588 0.87013 1.67218 1.06029 1.22648 1.33022 1.18417 0.88609 0.90473 0.86947 1.42295 1.09134 1.80494 1.07329 0.92431 0.96386 0.96275 0.92095 0.95804 0.84534 0.89691 0.94268 0.83655 0.82424 0.80241 0.76013 0.76178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.01 0.44 5.47 84.65 0.46 0.90 16 3 Si 0.95 44.81 27.47 68.60 1.88 46.70 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.53 -30.71 9.66 25.60 0.25 -30.46 16 8 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 9 C -0.01 -0.25 4.30 29.85 0.13 -0.12 16 10 C 0.09 3.27 5.62 86.30 0.49 3.76 16 11 N -0.69 -21.83 6.49 -517.94 -3.36 -25.19 16 12 C 0.11 2.87 5.15 85.56 0.44 3.31 16 13 C -0.21 -5.21 5.43 -19.63 -0.11 -5.32 16 14 C -0.03 -0.58 9.81 22.44 0.22 -0.36 16 15 C -0.23 -4.26 10.10 22.37 0.23 -4.04 16 16 C 0.13 2.65 11.17 84.64 0.95 3.60 16 17 N -0.57 -14.31 10.39 -193.26 -2.01 -16.31 16 18 C 0.39 9.89 7.73 133.04 1.03 10.92 16 19 N -0.85 -17.76 8.90 -55.44 -0.49 -18.25 16 20 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 21 H 0.02 0.82 7.20 -2.39 -0.02 0.81 16 22 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 23 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.34 10.35 8.20 -89.69 -0.74 9.62 16 26 H 0.08 2.13 8.03 -2.39 -0.02 2.11 16 27 H 0.04 0.95 7.11 -2.39 -0.02 0.93 16 28 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 31 H 0.41 8.12 6.62 -92.71 -0.61 7.51 16 32 H 0.41 7.38 8.95 -92.71 -0.83 6.55 16 Total: -1.00 -68.22 272.85 -0.69 -68.91 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -1.09 Total: 21.31 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 4.08 Total: -17.81 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -5.56 Total: -119.12 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -68.22 -0.69 -68.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308687431.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.368 kcal (2) G-P(sol) polarization free energy of solvation -68.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds