Wall clock time and date at job start Sun Mar 29 2020 21:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40021 * 126.05046 * 2 1 4 4 C 1.30763 * 108.20949 * 179.97438 * 3 2 1 5 5 C 1.40136 * 108.19962 * 359.97438 * 4 3 2 6 6 C 1.35002 * 107.90463 * 0.02562 * 5 4 3 7 7 C 1.50758 * 109.36989 * 179.97438 * 6 5 4 8 8 N 1.46747 * 107.57734 * 359.94308 * 7 6 5 9 9 C 1.34784 * 126.83486 * 180.02562 * 8 7 6 10 10 O 1.21686 * 119.99779 * 359.97438 * 9 8 7 11 11 C 1.46373 * 119.99827 * 179.97438 * 9 8 7 12 12 H 1.07995 * 120.00153 * 0.02562 * 11 9 8 13 13 C 1.40048 * 120.00086 * 179.97438 * 11 9 8 14 14 N 1.30674 * 119.99840 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00123 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47014 * 60.00714 * 15 13 11 17 17 H 1.48503 * 109.47018 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47322 * 300.00383 * 15 13 11 19 19 C 1.46969 * 106.20595 * 0.10430 * 8 7 6 20 20 H 1.09004 * 109.47412 * 270.02743 * 1 2 3 21 21 H 1.09007 * 109.47210 * 30.02870 * 1 2 3 22 22 H 1.09003 * 109.47188 * 150.02793 * 1 2 3 23 23 H 1.08004 * 125.90428 * 179.97438 * 4 3 2 24 24 H 1.09002 * 109.84744 * 119.48266 * 7 6 5 25 25 H 1.08997 * 109.84565 * 240.40820 * 7 6 5 26 26 H 0.97000 * 120.00169 * 179.97438 * 14 13 11 27 27 H 1.09000 * 109.76071 * 240.42631 * 19 8 7 28 28 H 1.08998 * 109.98950 * 119.47483 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1321 0.0000 4 6 3.5338 0.7314 0.0006 5 6 3.5425 -0.6699 0.0015 6 6 2.2605 -1.0930 0.0010 7 6 2.2314 -2.6003 0.0013 8 7 3.6215 -3.0704 0.0008 9 6 4.0414 -4.3511 0.0004 10 8 3.2295 -5.2576 0.0010 11 6 5.4740 -4.6516 -0.0006 12 1 6.1945 -3.8472 -0.0007 13 6 5.9103 -5.9824 -0.0005 14 7 5.0385 -6.9558 0.0001 15 14 7.7385 -6.3659 -0.0026 16 1 8.3681 -5.7819 1.2089 17 1 7.9354 -7.8378 -0.0027 18 1 8.3651 -5.7831 -1.2161 19 6 4.4622 -1.8648 0.0027 20 1 -0.3634 0.0005 1.0277 21 1 -0.3634 0.8898 -0.5143 22 1 -0.3634 -0.8902 -0.5134 23 1 4.4047 1.3702 0.0003 24 1 1.7193 -2.9603 0.8937 25 1 1.7185 -2.9607 -0.8904 26 1 5.3407 -7.8776 -0.0001 27 1 5.0884 -1.8508 -0.8894 28 1 5.0886 -1.8488 0.8945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329671606.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:37 Heat of formation + Delta-G solvation = 68.122161 kcal Electronic energy + Delta-G solvation = -14545.741003 eV Core-core repulsion = 11985.519887 eV Total energy + Delta-G solvation = -2560.221116 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.37761 -37.70697 -35.14745 -33.09469 -32.52628 -29.85288 -28.10572 -26.73254 -25.62320 -23.69892 -20.33241 -19.75791 -19.22215 -16.73030 -16.10789 -15.83033 -15.23158 -14.51618 -14.37076 -14.01440 -13.65578 -12.93783 -12.62770 -12.38970 -12.22270 -11.61456 -11.61055 -11.38489 -11.17889 -10.95996 -10.67395 -10.41178 -10.24985 -9.13340 -8.89929 -8.23589 -7.79417 -7.21130 -6.27210 -4.71716 1.98973 2.44835 2.96395 3.14586 3.19295 3.21268 4.00248 4.33720 4.48049 4.52498 4.78887 5.14027 5.20158 5.27137 5.37695 5.62706 5.83732 6.03001 6.07527 6.28904 6.46645 6.56306 6.82277 7.08498 7.18144 7.38793 7.82249 8.01170 8.32588 8.95067 9.36197 10.47261 10.66699 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055033 B = 0.007049 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.663885 B = 3971.428266 C = 4454.295728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.358 5.358 3 N -0.297 5.297 4 C 0.077 3.923 5 C -0.263 4.263 6 C 0.052 3.948 7 C 0.196 3.804 8 N -0.638 5.638 9 C 0.578 3.422 10 O -0.572 6.572 11 C -0.533 4.533 12 H 0.073 0.927 13 C 0.086 3.914 14 N -0.767 5.767 15 Si 0.912 3.088 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.267 1.267 19 C 0.199 3.801 20 H 0.072 0.928 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.185 0.815 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.271 0.729 27 H 0.063 0.937 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 11.218 -0.065 11.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.141 5.141 3 N -0.118 5.118 4 C -0.108 4.108 5 C -0.275 4.275 6 C -0.076 4.076 7 C 0.070 3.930 8 N -0.379 5.379 9 C 0.386 3.614 10 O -0.454 6.454 11 C -0.570 4.570 12 H 0.091 0.909 13 C -0.134 4.134 14 N -0.395 5.395 15 Si 0.737 3.263 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.191 1.191 19 C 0.074 3.926 20 H 0.091 0.909 21 H 0.105 0.895 22 H 0.105 0.895 23 H 0.202 0.798 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.688 11.381 -0.068 12.309 hybrid contribution 1.286 -0.599 0.016 1.419 sum -3.402 10.783 -0.052 11.307 Atomic orbital electron populations 1.21853 0.74522 1.04306 1.03232 1.47798 1.05993 1.01922 1.58351 1.77347 1.01121 1.07014 1.26336 1.23185 0.95048 0.92869 0.99721 1.21169 0.95771 0.94351 1.16206 1.21709 0.91858 0.93177 1.00885 1.19293 0.89245 0.82887 1.01576 1.48602 1.02406 1.05748 1.81188 1.18028 0.90088 0.76818 0.76431 1.90628 1.56269 1.42756 1.55725 1.20807 0.89550 0.92641 1.53970 0.90902 1.25743 0.99244 0.95864 0.92531 1.70005 1.34909 0.99905 1.34719 0.86350 0.82700 0.77674 0.79609 1.19123 1.20516 1.19126 1.19328 0.91555 0.80611 1.01150 0.90916 0.89479 0.89473 0.79801 0.91400 0.91414 0.91844 0.91862 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 11.47 59.85 0.69 1.76 15 2 N -0.36 -5.55 4.02 -63.88 -0.26 -5.80 15 3 N -0.30 -4.76 12.57 30.67 0.39 -4.38 15 4 C 0.08 1.17 12.03 -17.29 -0.21 0.97 15 5 C -0.26 -4.64 6.98 -105.02 -0.73 -5.37 15 6 C 0.05 0.92 7.66 -82.24 -0.63 0.29 15 7 C 0.20 3.91 6.94 -5.03 -0.03 3.87 15 8 N -0.64 -14.96 3.36 -177.43 -0.60 -15.56 15 9 C 0.58 16.51 7.81 -12.98 -0.10 16.41 15 10 O -0.57 -18.41 15.41 5.20 0.08 -18.33 15 11 C -0.53 -14.83 9.10 -35.63 -0.32 -15.15 15 12 H 0.07 1.85 7.24 -52.49 -0.38 1.47 15 13 C 0.09 2.36 5.50 -17.37 -0.10 2.27 15 14 N -0.77 -22.56 11.83 55.55 0.66 -21.91 15 15 Si 0.91 19.73 29.56 -169.99 -5.02 14.70 15 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 19 C 0.20 3.89 6.20 -4.89 -0.03 3.86 15 20 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.09 0.77 8.14 -51.93 -0.42 0.34 15 22 H 0.09 0.79 8.14 -51.93 -0.42 0.36 15 23 H 0.19 2.06 8.06 -52.48 -0.42 1.64 15 24 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 26 H 0.27 7.22 8.29 -40.82 -0.34 6.88 15 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 LS Contribution 252.35 15.07 3.80 3.80 Total: -1.00 -34.84 252.35 -5.32 -40.16 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -2.90 Total: -1.59 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -1.47 Total: 8.90 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.19 Total: -47.65 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.08 Total: -18.33 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -34.84 -5.32 -40.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329671606.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.285 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds