Wall clock time and date at job start Sun Mar 29 2020 21:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40021 * 126.05046 * 2 1 4 4 C 1.30763 * 108.20949 * 179.97438 * 3 2 1 5 5 C 1.40136 * 108.19962 * 359.97438 * 4 3 2 6 6 C 1.35002 * 107.90463 * 0.02562 * 5 4 3 7 7 C 1.50758 * 109.36989 * 179.97438 * 6 5 4 8 8 N 1.46747 * 107.57734 * 359.94308 * 7 6 5 9 9 C 1.34784 * 126.83486 * 180.02562 * 8 7 6 10 10 O 1.21686 * 119.99779 * 359.97438 * 9 8 7 11 11 C 1.46373 * 119.99827 * 179.97438 * 9 8 7 12 12 H 1.07995 * 120.00153 * 0.02562 * 11 9 8 13 13 C 1.40048 * 120.00086 * 179.97438 * 11 9 8 14 14 N 1.30674 * 119.99840 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00123 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47014 * 60.00714 * 15 13 11 17 17 H 1.48503 * 109.47018 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47322 * 300.00383 * 15 13 11 19 19 C 1.46969 * 106.20595 * 0.10430 * 8 7 6 20 20 H 1.09004 * 109.47412 * 270.02743 * 1 2 3 21 21 H 1.09007 * 109.47210 * 30.02870 * 1 2 3 22 22 H 1.09003 * 109.47188 * 150.02793 * 1 2 3 23 23 H 1.08004 * 125.90428 * 179.97438 * 4 3 2 24 24 H 1.09002 * 109.84744 * 119.48266 * 7 6 5 25 25 H 1.08997 * 109.84565 * 240.40820 * 7 6 5 26 26 H 0.97000 * 120.00169 * 179.97438 * 14 13 11 27 27 H 1.09000 * 109.76071 * 240.42631 * 19 8 7 28 28 H 1.08998 * 109.98950 * 119.47483 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1321 0.0000 4 6 3.5338 0.7314 0.0006 5 6 3.5425 -0.6699 0.0015 6 6 2.2605 -1.0930 0.0010 7 6 2.2314 -2.6003 0.0013 8 7 3.6215 -3.0704 0.0008 9 6 4.0414 -4.3511 0.0004 10 8 3.2295 -5.2576 0.0010 11 6 5.4740 -4.6516 -0.0006 12 1 6.1945 -3.8472 -0.0007 13 6 5.9103 -5.9824 -0.0005 14 7 5.0385 -6.9558 0.0001 15 14 7.7385 -6.3659 -0.0026 16 1 8.3681 -5.7819 1.2089 17 1 7.9354 -7.8378 -0.0027 18 1 8.3651 -5.7831 -1.2161 19 6 4.4622 -1.8648 0.0027 20 1 -0.3634 0.0005 1.0277 21 1 -0.3634 0.8898 -0.5143 22 1 -0.3634 -0.8902 -0.5134 23 1 4.4047 1.3702 0.0003 24 1 1.7193 -2.9603 0.8937 25 1 1.7185 -2.9607 -0.8904 26 1 5.3407 -7.8776 -0.0001 27 1 5.0884 -1.8508 -0.8894 28 1 5.0886 -1.8488 0.8945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329671606.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:37 Heat of formation + Delta-G solvation = 42.884984 kcal Electronic energy + Delta-G solvation = -14546.835369 eV Core-core repulsion = 11985.519887 eV Total energy + Delta-G solvation = -2561.315482 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.69838 -39.59381 -37.02788 -34.67374 -34.19553 -31.52212 -29.62312 -28.41504 -27.07955 -25.32349 -21.57692 -21.50940 -20.79625 -18.56995 -17.81931 -17.22314 -16.99542 -16.16945 -15.78110 -15.75331 -15.01784 -14.28678 -13.99242 -13.85294 -13.80000 -13.28308 -13.23884 -13.04241 -12.72712 -12.68862 -12.38198 -12.03230 -11.98126 -10.92273 -10.36875 -10.01141 -9.72641 -8.96048 -8.32996 -6.88696 0.69291 1.26421 1.43933 1.46547 1.58973 1.68983 2.23029 2.40924 2.61100 3.18128 3.54185 3.67583 3.77798 4.22450 4.34651 4.44764 4.45604 4.62764 4.67914 4.81083 4.86007 5.17431 5.31334 5.41206 5.59388 5.90348 5.95885 6.31378 6.59898 6.83863 7.34676 8.35455 8.62422 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055033 B = 0.007049 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.663885 B = 3971.428266 C = 4454.295728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.355 5.355 3 N -0.303 5.303 4 C 0.087 3.913 5 C -0.274 4.274 6 C 0.044 3.956 7 C 0.198 3.802 8 N -0.648 5.648 9 C 0.562 3.438 10 O -0.624 6.624 11 C -0.558 4.558 12 H 0.092 0.908 13 C 0.030 3.970 14 N -0.819 5.819 15 Si 1.001 2.999 16 H -0.253 1.253 17 H -0.274 1.274 18 H -0.253 1.253 19 C 0.199 3.801 20 H 0.089 0.911 21 H 0.107 0.893 22 H 0.098 0.902 23 H 0.224 0.776 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.277 0.723 27 H 0.067 0.933 28 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 13.042 -0.068 13.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.137 5.137 3 N -0.124 5.124 4 C -0.098 4.098 5 C -0.286 4.286 6 C -0.086 4.086 7 C 0.072 3.928 8 N -0.387 5.387 9 C 0.370 3.630 10 O -0.511 6.511 11 C -0.594 4.594 12 H 0.110 0.890 13 C -0.186 4.186 14 N -0.448 5.448 15 Si 0.820 3.180 16 H -0.176 1.176 17 H -0.199 1.199 18 H -0.177 1.177 19 C 0.075 3.925 20 H 0.107 0.893 21 H 0.125 0.875 22 H 0.117 0.883 23 H 0.240 0.760 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.435 13.287 -0.071 13.724 hybrid contribution 0.775 -1.086 0.019 1.334 sum -2.660 12.202 -0.052 12.488 Atomic orbital electron populations 1.22258 0.71887 1.05951 1.04841 1.48191 1.07508 1.00833 1.57218 1.77348 1.01546 1.07162 1.26362 1.23721 0.95963 0.91911 0.98207 1.21134 0.94987 0.95062 1.17438 1.21287 0.92827 0.92232 1.02245 1.19197 0.87380 0.84923 1.01296 1.48305 1.04761 1.05768 1.79835 1.18358 0.90503 0.77832 0.76286 1.90572 1.57447 1.45007 1.58073 1.21322 0.89827 0.93983 1.54243 0.88963 1.27021 1.05330 0.95191 0.91063 1.70169 1.38198 1.00717 1.35751 0.85019 0.74830 0.77718 0.80478 1.17646 1.19864 1.17655 1.19375 0.91598 0.80000 1.01520 0.89303 0.87459 0.88322 0.75998 0.91821 0.91766 0.91289 0.91461 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.68 11.47 127.77 1.47 3.15 15 2 N -0.35 -10.27 4.02 -356.02 -1.43 -11.70 15 3 N -0.30 -8.86 12.57 -56.88 -0.72 -9.58 15 4 C 0.09 2.39 12.03 85.31 1.03 3.42 15 5 C -0.27 -9.22 6.98 -20.12 -0.14 -9.36 15 6 C 0.04 1.49 7.66 41.32 0.32 1.81 15 7 C 0.20 8.02 6.94 85.60 0.59 8.62 15 8 N -0.65 -30.97 3.36 -833.48 -2.80 -33.77 15 9 C 0.56 33.09 7.81 86.36 0.67 33.77 15 10 O -0.62 -42.02 15.41 -4.30 -0.07 -42.09 15 11 C -0.56 -31.35 9.10 24.83 0.23 -31.12 15 12 H 0.09 4.63 7.24 -2.91 -0.02 4.61 15 13 C 0.03 1.62 5.50 85.30 0.47 2.09 15 14 N -0.82 -49.43 11.83 21.84 0.26 -49.17 15 15 Si 1.00 39.99 29.56 68.60 2.03 42.02 15 16 H -0.25 -9.46 7.11 99.48 0.71 -8.76 15 17 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 18 H -0.25 -9.47 7.11 99.48 0.71 -8.76 15 19 C 0.20 7.68 6.20 85.57 0.53 8.21 15 20 H 0.09 1.40 8.14 -2.38 -0.02 1.38 15 21 H 0.11 1.58 8.14 -2.38 -0.02 1.56 15 22 H 0.10 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.22 4.07 8.06 -2.91 -0.02 4.05 15 24 H 0.06 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.06 2.61 8.14 -2.39 -0.02 2.59 15 26 H 0.28 15.10 8.29 -92.71 -0.77 14.33 15 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 28 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 Total: -1.00 -77.02 252.35 3.61 -73.41 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.17 Total: 10.29 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 5.16 Total: 20.58 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -4.68 Total: -104.21 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.07 Total: -42.09 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -77.02 3.61 -73.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329671606.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.295 kcal (2) G-P(sol) polarization free energy of solvation -77.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds