Wall clock time and date at job start Sun Mar 29 2020 21:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46856 * 2 1 4 4 C 1.36676 * 120.00058 * 95.56539 * 3 2 1 5 5 H 1.08000 * 120.00040 * 164.44308 * 4 3 2 6 6 C 1.39177 * 120.00311 * 344.44906 * 4 3 2 7 7 N 1.31277 * 119.99550 * 344.54939 * 6 4 3 8 8 Si 1.86797 * 120.00382 * 164.55381 * 6 4 3 9 9 H 1.48506 * 109.47083 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47161 * 119.99804 * 8 6 4 11 11 H 1.48500 * 109.47051 * 239.99832 * 8 6 4 12 12 C 1.34777 * 119.99778 * 275.56302 * 3 2 1 13 13 O 1.21545 * 119.99900 * 184.73745 * 12 3 2 14 14 C 1.48316 * 120.00008 * 4.73969 * 12 3 2 15 15 N 1.32558 * 119.20043 * 7.35919 * 14 12 3 16 16 C 1.32098 * 120.75849 * 179.75836 * 15 14 12 17 17 C 1.38816 * 119.17445 * 0.50672 * 16 15 14 18 18 C 1.38806 * 118.52782 * 359.74432 * 17 16 15 19 19 N 1.32097 * 119.17599 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.46712 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47081 * 299.99790 * 1 2 3 22 22 H 1.09001 * 109.47377 * 60.00013 * 1 2 3 23 23 H 1.09001 * 109.47081 * 240.00210 * 2 1 3 24 24 H 1.09001 * 109.47377 * 119.99987 * 2 1 3 25 25 H 0.96996 * 119.99924 * 180.02562 * 7 6 4 26 26 H 1.07998 * 120.40940 * 180.25317 * 16 15 14 27 27 H 1.07999 * 120.73351 * 179.77415 * 17 16 15 28 28 H 1.08005 * 120.41217 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3543 1.9873 1.1781 5 1 2.9413 2.8938 1.1708 6 6 1.9401 1.4363 2.3871 7 7 0.9913 0.5292 2.4041 8 14 2.7341 1.9874 3.9856 9 1 3.7698 3.0117 3.6964 10 1 1.6989 2.5678 4.8782 11 1 3.3653 0.8206 4.6528 12 6 2.1362 2.0543 -1.1617 13 8 2.6217 3.1685 -1.1720 14 6 1.6735 1.4353 -2.4276 15 7 1.0146 0.2859 -2.3825 16 6 0.5843 -0.2901 -3.4907 17 6 0.8393 0.3179 -4.7123 18 6 1.5363 1.5182 -4.7228 19 7 1.9339 2.0420 -3.5771 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 0.7023 0.1454 3.2467 26 1 0.0445 -1.2245 -3.4470 27 1 0.5023 -0.1328 -5.6341 28 1 1.7510 2.0176 -5.6560 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331244405.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:59 Heat of formation + Delta-G solvation = 57.421700 kcal Electronic energy + Delta-G solvation = -15115.007806 eV Core-core repulsion = 12554.322683 eV Total energy + Delta-G solvation = -2560.685123 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.62500 -38.07803 -35.18245 -33.33751 -32.04496 -31.24796 -29.26200 -25.88410 -24.07649 -23.75319 -22.04450 -20.03185 -17.42680 -16.73175 -16.56474 -15.73939 -14.91400 -14.65416 -14.15237 -14.06399 -13.38001 -13.17975 -12.69006 -12.51029 -11.83293 -11.19877 -11.11755 -10.73402 -10.62219 -10.44683 -10.36248 -9.98891 -9.64902 -9.15387 -8.91686 -8.55680 -8.44188 -7.71777 -6.40995 -3.88363 1.01276 1.52032 3.09016 3.20200 3.27760 3.64237 3.91694 4.30777 4.51708 4.61166 4.87448 5.11558 5.22452 5.28745 5.42850 5.83437 6.03294 6.55439 6.73495 6.86377 6.96676 7.16044 7.33736 7.40227 7.50939 7.92920 8.00292 8.37376 8.58805 9.09409 9.30674 9.94925 10.49812 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.050650 B = 0.009236 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.678469 B = 3030.948466 C = 3504.870377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.131 3.869 3 N -0.398 5.398 4 C -0.292 4.292 5 H 0.109 0.891 6 C 0.029 3.971 7 N -0.847 5.847 8 Si 0.932 3.068 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.475 3.525 13 O -0.574 6.574 14 C 0.305 3.695 15 N -0.480 5.480 16 C 0.131 3.869 17 C -0.245 4.245 18 C 0.137 3.863 19 N -0.483 5.483 20 H 0.029 0.971 21 H 0.085 0.915 22 H 0.031 0.969 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.270 0.730 26 H 0.163 0.837 27 H 0.140 0.860 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -5.726 -7.748 9.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.008 3.992 3 N -0.114 5.114 4 C -0.421 4.421 5 H 0.127 0.873 6 C -0.176 4.176 7 N -0.485 5.485 8 Si 0.758 3.242 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.204 1.204 12 C 0.262 3.738 13 O -0.457 6.457 14 C 0.038 3.962 15 N -0.198 5.198 16 C -0.035 4.035 17 C -0.269 4.269 18 C -0.031 4.031 19 N -0.198 5.198 20 H 0.048 0.952 21 H 0.103 0.897 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.181 0.819 27 H 0.157 0.843 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.869 -4.864 -6.693 8.482 hybrid contribution -0.257 -0.481 -0.294 0.619 sum -2.125 -5.345 -6.987 9.050 Atomic orbital electron populations 1.22027 0.96107 0.99253 1.01387 1.21620 0.95477 0.81967 1.00130 1.43786 1.51222 1.11742 1.04661 1.19993 1.30225 1.10156 0.81766 0.87312 1.25483 0.95435 0.96737 0.99957 1.70111 1.24019 1.27090 1.27308 0.85763 0.79295 0.78779 0.80362 1.18903 1.20512 1.20377 1.16964 0.88991 0.86134 0.81699 1.90622 1.50420 1.19724 1.84983 1.23655 0.91226 0.87284 0.94016 1.69428 1.10238 1.10082 1.30046 1.23355 0.93417 0.98680 0.88095 1.22884 1.04184 0.99279 1.00508 1.23220 0.91232 0.92003 0.96675 1.68356 1.19326 1.33888 0.98243 0.95213 0.89673 0.94984 0.92557 0.89718 0.91879 0.81934 0.84256 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.91 37.16 0.33 -2.56 15 2 C 0.13 3.10 4.86 -4.04 -0.02 3.08 15 3 N -0.40 -10.70 2.63 -115.73 -0.30 -11.00 15 4 C -0.29 -8.11 9.42 -15.04 -0.14 -8.25 15 5 H 0.11 3.16 7.29 -52.49 -0.38 2.77 15 6 C 0.03 0.75 5.05 -17.44 -0.09 0.66 15 7 N -0.85 -21.24 8.06 55.51 0.45 -20.79 15 8 Si 0.93 19.91 29.58 -169.99 -5.03 14.88 15 9 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 12 C 0.48 13.00 7.60 -12.11 -0.09 12.91 15 13 O -0.57 -17.47 16.50 5.33 0.09 -17.38 15 14 C 0.30 7.03 7.36 -157.00 -1.15 5.88 15 15 N -0.48 -9.50 3.86 -11.14 -0.04 -9.54 15 16 C 0.13 1.94 11.30 -17.22 -0.19 1.74 15 17 C -0.25 -3.14 10.18 -39.16 -0.40 -3.54 15 18 C 0.14 2.09 11.30 -17.23 -0.19 1.90 15 19 N -0.48 -10.29 10.14 -11.15 -0.11 -10.40 15 20 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.08 2.12 5.93 -51.93 -0.31 1.81 15 22 H 0.03 0.71 6.09 -51.93 -0.32 0.39 15 23 H 0.06 1.26 5.76 -51.93 -0.30 0.96 15 24 H 0.08 2.10 6.10 -51.93 -0.32 1.78 15 25 H 0.27 6.33 8.31 -40.82 -0.34 5.99 15 26 H 0.16 1.76 8.06 -52.49 -0.42 1.34 15 27 H 0.14 1.19 8.06 -52.49 -0.42 0.77 15 28 H 0.16 1.81 8.06 -52.48 -0.42 1.39 15 LS Contribution 239.85 15.07 3.61 3.61 Total: -1.00 -31.94 239.85 -5.74 -37.68 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -2.45 Total: 1.13 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: -1.95 Total: 11.82 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.01 Total: -51.74 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.09 Total: -17.38 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.94 -5.74 -37.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331244405.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.098 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds