Wall clock time and date at job start Sun Mar 29 2020 22:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31796 * 119.08373 * 2 1 4 4 C 1.32550 * 121.01197 * 180.02562 * 3 2 1 5 5 C 1.38119 * 119.19765 * 359.74215 * 4 3 2 6 6 C 1.50696 * 120.83564 * 180.24903 * 5 4 3 7 7 C 1.39625 * 118.33218 * 0.47679 * 5 4 3 8 8 N 1.38548 * 120.53042 * 179.80338 * 7 5 4 9 9 C 1.46498 * 119.99824 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47059 * 179.72373 * 9 8 7 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99965 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00490 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99545 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00173 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47173 * 59.99901 * 15 13 11 17 17 H 1.48497 * 109.47169 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47241 * 299.99984 * 15 13 11 19 19 N 1.31745 * 119.08663 * 179.97438 * 2 1 3 20 20 H 1.09006 * 109.47325 * 270.02321 * 1 2 3 21 21 H 1.09004 * 109.47415 * 30.01933 * 1 2 3 22 22 H 1.08999 * 109.47487 * 150.02547 * 1 2 3 23 23 H 1.07994 * 120.40008 * 180.02562 * 4 3 2 24 24 H 1.08992 * 109.47669 * 270.23384 * 6 5 4 25 25 H 1.09009 * 109.46736 * 30.23313 * 6 5 4 26 26 H 1.09003 * 109.47273 * 150.22347 * 6 5 4 27 27 H 0.97001 * 119.99731 * 359.71271 * 8 7 5 28 28 H 1.09004 * 109.46963 * 299.72168 * 9 8 7 29 29 H 1.08994 * 109.47567 * 59.72320 * 9 8 7 30 30 H 1.09004 * 109.47066 * 299.99732 * 10 9 8 31 31 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 32 32 H 0.97004 * 119.99855 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1476 1.1518 0.0000 4 6 3.4723 1.1964 -0.0005 5 6 4.1863 0.0140 0.0044 6 6 5.6932 0.0217 0.0096 7 6 3.4768 -1.1885 -0.0005 8 7 4.1470 -2.4011 0.0000 9 6 3.3909 -3.6559 -0.0047 10 6 4.3631 -4.8371 -0.0100 11 6 3.5855 -6.1279 -0.0141 12 1 2.5056 -6.1078 -0.0126 13 6 4.2524 -7.3347 -0.0198 14 7 5.5673 -7.3592 -0.0221 15 14 3.2883 -8.9346 -0.0242 16 1 2.4311 -8.9928 -1.2354 17 1 4.2320 -10.0812 -0.0307 18 1 2.4353 -9.0019 1.1895 19 7 2.1474 -1.1513 0.0005 20 1 -0.3634 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3634 -0.8902 -0.5134 23 1 3.9871 2.1457 -0.0001 24 1 6.0602 0.0256 -1.0167 25 1 6.0502 0.9126 0.5265 26 1 6.0593 -0.8674 0.5231 27 1 5.1168 -2.4192 -0.0005 28 1 2.7638 -3.7055 0.8856 29 1 2.7627 -3.6983 -0.8944 30 1 4.9902 -4.7876 -0.9002 31 1 4.9914 -4.7948 0.8797 32 1 6.0365 -8.2082 -0.0265 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332974536.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:55 Heat of formation + Delta-G solvation = 28.786323 kcal Electronic energy + Delta-G solvation = -14333.773321 eV Core-core repulsion = 11907.679570 eV Total energy + Delta-G solvation = -2426.093751 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.72376 -36.48431 -34.01239 -33.37502 -31.89453 -30.00086 -29.15959 -25.65279 -24.98317 -22.85530 -21.70553 -20.82976 -17.49318 -17.23908 -16.09864 -15.24538 -14.88249 -14.39906 -14.14379 -13.88680 -13.61353 -13.29767 -12.93153 -12.40599 -12.23882 -12.21501 -12.19779 -11.37585 -11.24270 -10.88181 -10.66645 -10.44244 -10.09711 -9.64000 -9.36689 -9.27979 -8.80620 -8.46253 -7.60076 -6.11706 -4.14840 1.26695 1.70392 3.29383 3.33342 3.35622 3.53405 4.10478 4.32064 4.39511 4.57694 4.95889 5.12947 5.25344 5.28633 5.53280 5.61728 5.67843 5.76589 5.88757 6.05211 6.11423 6.25386 6.33419 6.66140 6.74283 7.13792 7.36753 7.58053 7.62472 7.87106 7.95734 8.26271 8.64171 8.90706 9.50030 10.99978 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039537 B = 0.005755 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.028044 B = 4863.820576 C = 5540.791364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.349 3.651 3 N -0.574 5.574 4 C 0.171 3.829 5 C -0.275 4.275 6 C -0.093 4.093 7 C 0.444 3.556 8 N -0.698 5.698 9 C 0.130 3.870 10 C 0.011 3.989 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 N -0.571 5.571 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.158 0.842 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.408 0.592 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 14.370 0.031 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.080 3.920 3 N -0.294 5.294 4 C 0.009 3.991 5 C -0.286 4.286 6 C -0.152 4.152 7 C 0.197 3.803 8 N -0.328 5.328 9 C 0.008 3.992 10 C -0.026 4.026 11 C -0.560 4.560 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 N -0.297 5.297 20 H 0.100 0.900 21 H 0.100 0.900 22 H 0.101 0.899 23 H 0.175 0.825 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.246 0.754 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.752 14.011 0.034 14.505 hybrid contribution 0.983 -0.999 0.015 1.402 sum -2.768 13.013 0.048 13.304 Atomic orbital electron populations 1.20497 0.86369 1.03677 1.03469 1.22858 0.97523 0.82881 0.88713 1.68202 1.09675 1.29879 1.21644 1.22628 0.89453 0.97044 0.89940 1.20890 0.98224 0.93815 1.15652 1.20435 0.89987 1.02641 1.02095 1.18538 0.88406 0.86581 0.86746 1.45221 1.08993 1.03166 1.75440 1.21739 0.95428 0.81277 1.00803 1.19330 0.94484 0.91039 0.97754 1.20984 0.93182 0.90300 1.51562 0.92257 1.24998 0.94919 0.99406 0.94936 1.69947 1.06731 1.26415 1.50222 0.86557 0.79654 0.82454 0.78786 1.20092 1.21220 1.20088 1.67863 1.07576 1.30746 1.23486 0.90019 0.90027 0.89858 0.82498 0.91479 0.91381 0.91840 0.75428 0.92558 0.92542 0.96038 0.96054 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.32 36.00 0.37 -0.61 16 2 C 0.35 5.60 7.64 -157.24 -1.20 4.40 16 3 N -0.57 -8.86 10.33 -10.81 -0.11 -8.97 16 4 C 0.17 2.33 10.99 -17.29 -0.19 2.14 16 5 C -0.27 -3.97 5.93 -104.15 -0.62 -4.59 16 6 C -0.09 -1.03 9.64 36.00 0.35 -0.68 16 7 C 0.44 7.77 7.50 -154.77 -1.16 6.61 16 8 N -0.70 -12.59 5.62 -60.27 -0.34 -12.93 16 9 C 0.13 2.75 5.67 -4.04 -0.02 2.73 16 10 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 11 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 15 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 N -0.57 -10.41 9.60 -9.97 -0.10 -10.51 16 20 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.60 8.10 -51.92 -0.42 0.18 16 26 H 0.06 0.71 6.68 -51.93 -0.35 0.37 16 27 H 0.41 6.64 6.60 -40.82 -0.27 6.37 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 277.66 15.07 4.18 4.18 Total: -1.00 -30.94 277.66 -8.06 -38.99 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.38 Total: 1.40 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.03 Total: -3.04 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.19 Total: -57.81 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.94 -8.06 -38.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332974536.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.780 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds