Wall clock time and date at job start Sun Mar 29 2020 22:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31796 * 119.08373 * 2 1 4 4 C 1.32550 * 121.01197 * 180.02562 * 3 2 1 5 5 C 1.38119 * 119.19765 * 359.74215 * 4 3 2 6 6 C 1.50696 * 120.83564 * 180.24903 * 5 4 3 7 7 C 1.39625 * 118.33218 * 0.47679 * 5 4 3 8 8 N 1.38548 * 120.53042 * 179.80338 * 7 5 4 9 9 C 1.46498 * 119.99824 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47059 * 179.72373 * 9 8 7 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99965 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00490 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99545 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00173 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47173 * 59.99901 * 15 13 11 17 17 H 1.48497 * 109.47169 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47241 * 299.99984 * 15 13 11 19 19 N 1.31745 * 119.08663 * 179.97438 * 2 1 3 20 20 H 1.09006 * 109.47325 * 270.02321 * 1 2 3 21 21 H 1.09004 * 109.47415 * 30.01933 * 1 2 3 22 22 H 1.08999 * 109.47487 * 150.02547 * 1 2 3 23 23 H 1.07994 * 120.40008 * 180.02562 * 4 3 2 24 24 H 1.08992 * 109.47669 * 270.23384 * 6 5 4 25 25 H 1.09009 * 109.46736 * 30.23313 * 6 5 4 26 26 H 1.09003 * 109.47273 * 150.22347 * 6 5 4 27 27 H 0.97001 * 119.99731 * 359.71271 * 8 7 5 28 28 H 1.09004 * 109.46963 * 299.72168 * 9 8 7 29 29 H 1.08994 * 109.47567 * 59.72320 * 9 8 7 30 30 H 1.09004 * 109.47066 * 299.99732 * 10 9 8 31 31 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 32 32 H 0.97004 * 119.99855 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1476 1.1518 0.0000 4 6 3.4723 1.1964 -0.0005 5 6 4.1863 0.0140 0.0044 6 6 5.6932 0.0217 0.0096 7 6 3.4768 -1.1885 -0.0005 8 7 4.1470 -2.4011 0.0000 9 6 3.3909 -3.6559 -0.0047 10 6 4.3631 -4.8371 -0.0100 11 6 3.5855 -6.1279 -0.0141 12 1 2.5056 -6.1078 -0.0126 13 6 4.2524 -7.3347 -0.0198 14 7 5.5673 -7.3592 -0.0221 15 14 3.2883 -8.9346 -0.0242 16 1 2.4311 -8.9928 -1.2354 17 1 4.2320 -10.0812 -0.0307 18 1 2.4353 -9.0019 1.1895 19 7 2.1474 -1.1513 0.0005 20 1 -0.3634 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3634 -0.8902 -0.5134 23 1 3.9871 2.1457 -0.0001 24 1 6.0602 0.0256 -1.0167 25 1 6.0502 0.9126 0.5265 26 1 6.0593 -0.8674 0.5231 27 1 5.1168 -2.4192 -0.0005 28 1 2.7638 -3.7055 0.8856 29 1 2.7627 -3.6983 -0.8944 30 1 4.9902 -4.7876 -0.9002 31 1 4.9914 -4.7948 0.8797 32 1 6.0365 -8.2082 -0.0265 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332974536.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:54 Heat of formation + Delta-G solvation = 9.676984 kcal Electronic energy + Delta-G solvation = -14334.601965 eV Core-core repulsion = 11907.679570 eV Total energy + Delta-G solvation = -2426.922394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.92706 -37.93382 -35.50743 -34.91464 -33.50269 -30.99208 -30.90445 -26.96420 -26.51374 -24.32418 -23.06611 -22.42775 -18.89733 -18.72822 -17.91662 -16.56812 -16.52868 -15.94260 -15.51525 -15.28550 -15.01853 -14.24400 -14.23482 -14.01590 -13.38426 -13.35767 -13.15932 -13.05867 -12.95913 -12.57115 -12.52333 -11.77574 -11.63493 -11.59126 -11.44304 -10.62515 -10.49135 -10.05435 -8.92867 -8.25797 -6.36819 0.12099 0.46608 1.40961 1.43522 1.51526 2.15554 2.42387 2.91868 3.09033 3.24529 3.43992 3.82321 4.12119 4.25663 4.47568 4.49763 4.53344 4.75821 4.79914 4.80727 4.84740 5.00087 5.05199 5.22364 5.33788 5.54716 5.56786 5.71579 5.86400 6.12407 6.19750 6.68172 6.77738 7.32661 7.41513 8.86165 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039537 B = 0.005755 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.028044 B = 4863.820576 C = 5540.791364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.331 3.669 3 N -0.578 5.578 4 C 0.170 3.830 5 C -0.270 4.270 6 C -0.092 4.092 7 C 0.418 3.582 8 N -0.703 5.703 9 C 0.157 3.843 10 C 0.022 3.978 11 C -0.546 4.546 12 H 0.061 0.939 13 C 0.007 3.993 14 N -0.928 5.928 15 Si 0.967 3.033 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.267 1.267 19 N -0.602 5.602 20 H 0.094 0.906 21 H 0.099 0.901 22 H 0.081 0.919 23 H 0.199 0.801 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.415 0.585 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.004 0.996 31 H 0.004 0.996 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 15.464 0.059 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.063 3.937 3 N -0.298 5.298 4 C 0.009 3.991 5 C -0.281 4.281 6 C -0.150 4.150 7 C 0.173 3.827 8 N -0.336 5.336 9 C 0.034 3.966 10 C -0.016 4.016 11 C -0.585 4.585 12 H 0.079 0.921 13 C -0.192 4.192 14 N -0.568 5.568 15 Si 0.791 3.209 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.192 1.192 19 N -0.329 5.329 20 H 0.112 0.888 21 H 0.118 0.882 22 H 0.100 0.900 23 H 0.216 0.784 24 H 0.096 0.904 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.253 0.747 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.154 15.150 0.062 15.709 hybrid contribution 1.118 -1.207 0.006 1.645 sum -3.036 13.943 0.068 14.270 Atomic orbital electron populations 1.20599 0.84100 1.04480 1.04501 1.23536 0.99074 0.82542 0.88557 1.68302 1.10693 1.29461 1.21303 1.23340 0.89015 0.98394 0.88381 1.21241 0.99986 0.92717 1.14110 1.20521 0.87553 1.03790 1.03114 1.18876 0.88802 0.87086 0.87954 1.44898 1.09066 1.02507 1.77115 1.21129 0.94208 0.81656 0.99648 1.19137 0.94476 0.92049 0.95934 1.21416 0.93625 0.91741 1.51683 0.92100 1.25902 0.95904 1.03097 0.94311 1.70062 1.08305 1.27462 1.50936 0.85469 0.78317 0.77900 0.79199 1.19239 1.20612 1.19230 1.67848 1.08358 1.32253 1.24398 0.88761 0.88230 0.89986 0.78401 0.90419 0.88513 0.92406 0.74657 0.93683 0.93661 0.97761 0.97774 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.32 71.23 0.73 -1.05 16 2 C 0.33 10.30 7.64 138.76 1.06 11.36 16 3 N -0.58 -16.69 10.33 -188.12 -1.94 -18.63 16 4 C 0.17 4.18 10.99 84.56 0.93 5.11 16 5 C -0.27 -7.32 5.93 -19.56 -0.12 -7.44 16 6 C -0.09 -1.81 9.64 71.23 0.69 -1.12 16 7 C 0.42 14.50 7.50 133.16 1.00 15.49 16 8 N -0.70 -25.77 5.62 -344.60 -1.93 -27.70 16 9 C 0.16 6.86 5.67 86.38 0.49 7.35 16 10 C 0.02 1.11 5.09 29.85 0.15 1.26 16 11 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 13 C 0.01 0.37 5.46 84.65 0.46 0.83 16 14 N -0.93 -54.89 13.29 21.45 0.28 -54.61 16 15 Si 0.97 43.61 29.54 68.60 2.03 45.63 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 19 N -0.60 -21.93 9.60 -185.44 -1.78 -23.71 16 20 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 21 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.10 1.35 8.10 -2.38 -0.02 1.34 16 26 H 0.06 1.22 6.68 -2.39 -0.02 1.20 16 27 H 0.41 13.72 6.60 -92.71 -0.61 13.11 16 28 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -66.56 277.66 2.78 -63.77 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.50 Total: 13.92 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 5.63 Total: 1.33 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -5.37 Total: -124.65 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -66.56 2.78 -63.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332974536.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.449 kcal (2) G-P(sol) polarization free energy of solvation -66.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds