Wall clock time and date at job start Sun Mar 29 2020 21:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21293 * 120.00006 * 119.99875 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 2 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31414 * 119.99926 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47425 * 90.00231 * 11 9 7 13 13 H 1.48499 * 109.47218 * 210.00087 * 11 9 7 14 14 H 1.48505 * 109.47256 * 330.00093 * 11 9 7 15 15 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 16 16 C 1.38390 * 120.00328 * 324.72355 * 15 2 1 17 17 N 1.32127 * 119.99767 * 179.78163 * 16 15 2 18 18 C 1.32154 * 120.00260 * 0.49394 * 17 16 15 19 19 C 1.38338 * 119.99872 * 359.73712 * 18 17 16 20 20 N 1.32124 * 120.00188 * 145.00097 * 15 2 1 21 21 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 22 22 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 24 24 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 25 25 H 0.96999 * 119.99863 * 180.02562 * 10 9 7 26 26 H 1.07996 * 120.00106 * 0.02821 * 16 15 2 27 27 H 1.07997 * 120.00007 * 179.71392 * 18 17 16 28 28 H 1.07998 * 120.00283 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7297 -1.6968 1.1189 6 7 1.7068 -0.2502 2.4545 7 6 2.1592 -0.8999 3.5738 8 1 2.7801 -1.7781 3.4746 9 6 1.8189 -0.4286 4.8359 10 7 1.0630 0.6396 4.9566 11 14 2.4358 -1.3135 6.3609 12 1 3.7424 -0.7397 6.7716 13 1 1.4536 -1.1456 7.4620 14 1 2.6018 -2.7585 6.0617 15 6 2.0322 -0.7103 -1.2305 16 6 1.3404 -1.7989 -1.7320 17 7 1.7784 -2.4189 -2.8134 18 6 2.8826 -2.0056 -3.4105 19 6 3.5768 -0.9204 -2.9065 20 7 3.1361 -0.2972 -1.8276 21 1 -0.3634 0.5139 -0.8898 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.1490 0.5383 2.5436 25 1 0.8258 0.9688 5.8376 26 1 0.4403 -2.1392 -1.2418 27 1 3.2431 -2.5153 -4.2918 28 1 4.4793 -0.5828 -3.3942 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333254100.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:12 Heat of formation + Delta-G solvation = 3.717522 kcal Electronic energy + Delta-G solvation = -14480.738856 eV Core-core repulsion = 11917.724945 eV Total energy + Delta-G solvation = -2563.013911 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.90983 -38.35448 -34.52078 -33.90808 -33.50046 -31.28943 -29.69299 -25.47871 -24.78072 -24.18743 -22.30120 -19.16840 -18.01715 -17.33458 -16.82352 -16.03632 -15.47586 -14.70192 -14.19024 -14.13597 -13.91548 -13.54082 -12.83784 -12.48885 -11.78621 -11.66833 -11.48373 -11.37670 -11.17305 -10.98383 -10.89449 -10.41631 -10.25052 -9.56334 -9.05491 -8.81630 -8.40580 -8.02401 -6.46160 -3.87190 1.03537 1.40494 3.15449 3.24857 3.30632 3.81510 3.87827 4.16176 4.24463 4.49533 4.75182 4.95596 4.97663 5.17610 5.34434 5.40163 5.55843 5.61357 5.77416 5.91843 6.13160 6.28299 6.44271 6.61633 7.51475 7.52002 7.99807 8.03893 8.54024 9.12104 9.47258 9.97763 10.71190 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053278 B = 0.006695 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.418570 B = 4181.341644 C = 4377.825395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 H 0.105 0.895 4 C 0.450 3.550 5 O -0.591 6.591 6 N -0.554 5.554 7 C -0.301 4.301 8 H 0.103 0.897 9 C 0.025 3.975 10 N -0.899 5.899 11 Si 0.931 3.069 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.131 3.869 16 C 0.065 3.935 17 N -0.440 5.440 18 C 0.030 3.970 19 C 0.050 3.950 20 N -0.435 5.435 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.394 0.606 25 H 0.273 0.727 26 H 0.167 0.833 27 H 0.164 0.836 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 0.433 -11.479 11.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 H 0.123 0.877 4 C 0.235 3.765 5 O -0.477 6.477 6 N -0.189 5.189 7 C -0.431 4.431 8 H 0.121 0.879 9 C -0.177 4.177 10 N -0.540 5.540 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.208 1.208 14 H -0.194 1.194 15 C -0.010 4.010 16 C -0.095 4.095 17 N -0.155 5.155 18 C -0.129 4.129 19 C -0.110 4.110 20 N -0.150 5.150 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.228 0.772 25 H 0.082 0.918 26 H 0.184 0.816 27 H 0.182 0.818 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.748 -0.135 -11.375 11.400 hybrid contribution 0.120 0.099 0.872 0.886 sum -0.628 -0.035 -10.503 10.522 Atomic orbital electron populations 1.21871 0.92405 1.02934 1.02937 1.20121 0.96853 1.00628 0.90483 0.87743 1.19427 0.86010 0.87226 0.83827 1.90545 1.42263 1.28545 1.86320 1.41809 1.45617 1.27455 1.04048 1.19721 1.29421 1.10890 0.83045 0.87902 1.25269 0.96731 0.96463 0.99275 1.69608 1.36341 1.22833 1.25174 0.85848 0.78340 0.79748 0.80318 1.20353 1.20841 1.19387 1.21665 0.90674 0.93761 0.94939 1.23522 1.00793 0.92544 0.92681 1.68412 1.12298 1.27176 1.07578 1.23630 0.92733 0.95976 1.00596 1.23676 1.00205 0.93966 0.93158 1.68213 1.10790 1.29265 1.06702 0.92063 0.91724 0.90548 0.77212 0.91751 0.81554 0.81847 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.53 37.16 0.32 -1.76 15 2 C -0.06 -1.05 3.06 -92.92 -0.28 -1.33 15 3 H 0.10 1.79 8.14 -51.93 -0.42 1.37 15 4 C 0.45 10.70 7.10 -10.99 -0.08 10.62 15 5 O -0.59 -16.40 15.61 5.55 0.09 -16.31 15 6 N -0.55 -13.89 5.18 -10.96 -0.06 -13.95 15 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 15 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 15 9 C 0.02 0.65 5.50 -17.47 -0.10 0.56 15 10 N -0.90 -24.04 13.05 55.50 0.72 -23.32 15 11 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 15 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 15 C 0.13 2.37 5.03 -82.41 -0.41 1.96 15 16 C 0.06 1.10 10.33 -17.37 -0.18 0.92 15 17 N -0.44 -7.10 10.50 -13.06 -0.14 -7.24 15 18 C 0.03 0.40 11.22 -17.38 -0.20 0.21 15 19 C 0.05 0.70 11.22 -17.37 -0.20 0.50 15 20 N -0.43 -7.75 10.42 -9.29 -0.10 -7.84 15 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 22 H 0.06 0.91 6.52 -51.93 -0.34 0.57 15 23 H 0.08 1.10 7.56 -51.93 -0.39 0.71 15 24 H 0.39 9.34 7.32 -40.82 -0.30 9.04 15 25 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 26 H 0.17 2.53 6.33 -52.49 -0.33 2.20 15 27 H 0.16 1.51 8.06 -52.49 -0.42 1.09 15 28 H 0.17 1.64 8.06 -52.49 -0.42 1.22 15 LS Contribution 252.90 15.07 3.81 3.81 Total: -1.00 -32.81 252.90 -4.53 -37.34 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -2.56 Total: 8.44 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.27 Total: 3.17 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.43 Total: -52.34 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.09 Total: -16.31 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.81 -4.53 -37.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333254100.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.057 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds