Wall clock time and date at job start Sun Mar 29 2020 21:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21293 * 120.00006 * 119.99875 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 2 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31414 * 119.99926 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47425 * 90.00231 * 11 9 7 13 13 H 1.48499 * 109.47218 * 210.00087 * 11 9 7 14 14 H 1.48505 * 109.47256 * 330.00093 * 11 9 7 15 15 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 16 16 C 1.38390 * 120.00328 * 324.72355 * 15 2 1 17 17 N 1.32127 * 119.99767 * 179.78163 * 16 15 2 18 18 C 1.32154 * 120.00260 * 0.49394 * 17 16 15 19 19 C 1.38338 * 119.99872 * 359.73712 * 18 17 16 20 20 N 1.32124 * 120.00188 * 145.00097 * 15 2 1 21 21 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 22 22 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 24 24 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 25 25 H 0.96999 * 119.99863 * 180.02562 * 10 9 7 26 26 H 1.07996 * 120.00106 * 0.02821 * 16 15 2 27 27 H 1.07997 * 120.00007 * 179.71392 * 18 17 16 28 28 H 1.07998 * 120.00283 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7297 -1.6968 1.1189 6 7 1.7068 -0.2502 2.4545 7 6 2.1592 -0.8999 3.5738 8 1 2.7801 -1.7781 3.4746 9 6 1.8189 -0.4286 4.8359 10 7 1.0630 0.6396 4.9566 11 14 2.4358 -1.3135 6.3609 12 1 3.7424 -0.7397 6.7716 13 1 1.4536 -1.1456 7.4620 14 1 2.6018 -2.7585 6.0617 15 6 2.0322 -0.7103 -1.2305 16 6 1.3404 -1.7989 -1.7320 17 7 1.7784 -2.4189 -2.8134 18 6 2.8826 -2.0056 -3.4105 19 6 3.5768 -0.9204 -2.9065 20 7 3.1361 -0.2972 -1.8276 21 1 -0.3634 0.5139 -0.8898 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.1490 0.5383 2.5436 25 1 0.8258 0.9688 5.8376 26 1 0.4403 -2.1392 -1.2418 27 1 3.2431 -2.5153 -4.2918 28 1 4.4793 -0.5828 -3.3942 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333254100.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:12 Heat of formation + Delta-G solvation = -21.139344 kcal Electronic energy + Delta-G solvation = -14481.816730 eV Core-core repulsion = 11917.724945 eV Total energy + Delta-G solvation = -2564.091785 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.14260 -40.17848 -36.17365 -35.62237 -34.81357 -33.25170 -30.95304 -27.25916 -26.22310 -25.39246 -23.77533 -20.92161 -20.00237 -18.59489 -17.96924 -17.76828 -16.94014 -16.42850 -15.76689 -15.61785 -15.53011 -14.92450 -14.53112 -13.77530 -13.52466 -13.23841 -12.94378 -12.80196 -12.61060 -12.42504 -12.33628 -12.16725 -12.12528 -11.55146 -10.48620 -10.09584 -10.06542 -10.00641 -8.49390 -5.98698 -0.14146 0.19855 1.36230 1.41254 1.53683 1.97694 2.27402 2.66936 3.03671 3.17698 3.30564 3.39274 3.60761 3.76941 4.11791 4.18800 4.28568 4.44120 4.51564 4.68264 4.83398 4.93504 5.22817 5.38701 5.45964 5.95400 6.34562 6.53971 6.85413 7.07699 7.49284 8.04030 8.67613 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053278 B = 0.006695 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.418570 B = 4181.341644 C = 4377.825395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 H 0.112 0.888 4 C 0.449 3.551 5 O -0.635 6.635 6 N -0.561 5.561 7 C -0.337 4.337 8 H 0.077 0.923 9 C -0.008 4.008 10 N -0.915 5.915 11 Si 0.992 3.008 12 H -0.272 1.272 13 H -0.268 1.268 14 H -0.274 1.274 15 C 0.102 3.898 16 C 0.051 3.949 17 N -0.457 5.457 18 C 0.042 3.958 19 C 0.049 3.951 20 N -0.465 5.465 21 H 0.093 0.907 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.399 0.601 25 H 0.280 0.720 26 H 0.173 0.827 27 H 0.211 0.789 28 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 0.529 -12.459 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 H 0.130 0.870 4 C 0.236 3.764 5 O -0.523 6.523 6 N -0.196 5.196 7 C -0.467 4.467 8 H 0.095 0.905 9 C -0.208 4.208 10 N -0.555 5.555 11 Si 0.816 3.184 12 H -0.197 1.197 13 H -0.192 1.192 14 H -0.199 1.199 15 C -0.038 4.038 16 C -0.107 4.107 17 N -0.172 5.172 18 C -0.118 4.118 19 C -0.111 4.111 20 N -0.181 5.181 21 H 0.112 0.888 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.234 0.766 25 H 0.089 0.911 26 H 0.190 0.810 27 H 0.227 0.773 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.700 -0.006 -12.338 12.357 hybrid contribution 0.179 0.051 1.033 1.049 sum -0.521 0.044 -11.305 11.317 Atomic orbital electron populations 1.21860 0.89636 1.03498 1.04426 1.20011 0.99059 0.99974 0.87879 0.87028 1.20409 0.84512 0.86540 0.84953 1.90501 1.43990 1.30627 1.87207 1.41843 1.45971 1.27615 1.04193 1.19656 1.30911 1.11303 0.84783 0.90505 1.26022 0.96428 0.97001 1.01388 1.69660 1.36309 1.23283 1.26251 0.84942 0.78250 0.78237 0.76995 1.19727 1.19223 1.19870 1.21611 0.91759 0.94915 0.95468 1.23622 1.01308 0.92451 0.93310 1.68472 1.13638 1.27485 1.07606 1.24425 0.91194 0.95244 1.00982 1.24423 1.01156 0.93596 0.91953 1.68177 1.10955 1.30653 1.08280 0.88837 0.91669 0.90684 0.76621 0.91085 0.80953 0.77271 0.77722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.53 71.98 0.61 -3.22 15 2 C -0.05 -1.68 3.06 -12.29 -0.04 -1.72 15 3 H 0.11 3.83 8.14 -2.39 -0.02 3.81 15 4 C 0.45 21.87 7.10 87.66 0.62 22.50 15 5 O -0.64 -36.41 15.61 -3.07 -0.05 -36.46 15 6 N -0.56 -28.85 5.18 -306.98 -1.59 -30.44 15 7 C -0.34 -19.20 9.68 84.04 0.81 -18.39 15 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 15 9 C -0.01 -0.42 5.50 84.93 0.47 0.05 15 10 N -0.91 -48.70 13.05 21.66 0.28 -48.42 15 11 Si 0.99 42.78 29.55 68.60 2.03 44.80 15 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 13 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 14 H -0.27 -11.92 7.11 99.48 0.71 -11.22 15 15 C 0.10 3.66 5.03 42.55 0.21 3.87 15 16 C 0.05 1.71 10.33 84.68 0.87 2.59 15 17 N -0.46 -13.97 10.50 -195.23 -2.05 -16.02 15 18 C 0.04 0.99 11.22 84.67 0.95 1.94 15 19 C 0.05 1.25 11.22 84.67 0.95 2.20 15 20 N -0.47 -16.07 10.42 -183.30 -1.91 -17.98 15 21 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.06 1.81 6.52 -2.39 -0.02 1.80 15 23 H 0.07 2.11 7.56 -2.39 -0.02 2.10 15 24 H 0.40 19.30 7.32 -92.71 -0.68 18.62 15 25 H 0.28 13.88 8.31 -92.71 -0.77 13.11 15 26 H 0.17 5.24 6.33 -2.91 -0.02 5.22 15 27 H 0.21 2.88 8.06 -2.91 -0.02 2.86 15 28 H 0.21 3.30 8.06 -2.91 -0.02 3.27 15 Total: -1.00 -71.98 252.90 2.69 -69.28 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.51 Total: 25.42 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.47 Total: 9.81 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -5.27 Total: -112.86 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.05 Total: -36.46 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.98 2.69 -69.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333254100.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.144 kcal (2) G-P(sol) polarization free energy of solvation -71.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds