Wall clock time and date at job start Sun Mar 29 2020 22:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50690 * 109.47319 * 2 1 4 4 N 1.31793 * 119.08318 * 89.99725 * 3 2 1 5 5 C 1.32554 * 121.00960 * 180.02562 * 4 3 2 6 6 C 1.38113 * 119.20036 * 0.02562 * 5 4 3 7 7 C 1.39627 * 118.33326 * 0.02562 * 6 5 4 8 8 N 1.38545 * 120.53282 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99593 * 359.97438 * 8 7 6 10 10 H 1.08995 * 109.47531 * 35.00800 * 9 8 7 11 11 C 1.53004 * 109.47542 * 275.00324 * 9 8 7 12 12 C 1.50707 * 109.46900 * 155.00426 * 9 8 7 13 13 H 1.07998 * 119.99692 * 0.02562 * 12 9 8 14 14 C 1.37872 * 119.99832 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00252 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 119.99737 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46803 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46834 * 119.99875 * 16 14 12 19 19 H 1.48496 * 109.47355 * 240.00242 * 16 14 12 20 20 N 1.31749 * 119.08839 * 270.00110 * 3 2 1 21 21 H 1.08997 * 109.46958 * 299.99865 * 1 2 3 22 22 H 1.08998 * 109.47057 * 60.00245 * 1 2 3 23 23 H 1.09004 * 109.46971 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46705 * 239.99692 * 2 1 3 25 25 H 1.09001 * 109.46819 * 120.00224 * 2 1 3 26 26 H 1.08000 * 120.39633 * 179.97438 * 5 4 3 27 27 H 1.07998 * 120.83717 * 180.02562 * 6 5 4 28 28 H 0.96996 * 119.99998 * 179.97438 * 8 7 6 29 29 H 1.09001 * 109.46891 * 60.00202 * 11 9 8 30 30 H 1.08999 * 109.47222 * 180.02562 * 11 9 8 31 31 H 1.09003 * 109.46927 * 300.00422 * 11 9 8 32 32 H 0.97003 * 120.00114 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6870 3.2739 1.1963 6 6 2.9241 3.9473 0.0140 7 6 2.6866 3.2788 -1.1885 8 7 2.9095 3.9107 -2.4011 9 6 3.3978 5.2917 -2.4284 10 1 4.0803 5.4524 -1.5939 11 6 2.2138 6.2538 -2.3116 12 6 4.1228 5.5426 -3.7257 13 1 4.2106 4.7525 -4.4567 14 6 4.6729 6.7810 -3.9795 15 7 4.5655 7.7432 -3.0895 16 14 5.5722 7.0918 -5.5871 17 1 5.5538 5.8566 -6.4112 18 1 4.8990 8.1896 -6.3266 19 1 6.9778 7.4762 -5.3018 20 7 2.2459 2.0246 -1.1513 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.8582 3.7594 2.1457 27 1 3.2841 4.9655 0.0195 28 1 2.7424 3.4388 -3.2319 29 1 1.6895 6.0723 -1.3734 30 1 2.5771 7.2812 -2.3324 31 1 1.5314 6.0931 -3.1462 32 1 4.9529 8.6145 -3.2680 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333360234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:23 Heat of formation + Delta-G solvation = 33.744015 kcal Electronic energy + Delta-G solvation = -14629.005710 eV Core-core repulsion = 12203.126940 eV Total energy + Delta-G solvation = -2425.878770 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34582 -36.47896 -33.83040 -33.35467 -31.78785 -29.73490 -28.36617 -25.42342 -24.59467 -23.08783 -21.78832 -20.02948 -17.90479 -16.64392 -16.07715 -14.99856 -14.86964 -14.54386 -13.97448 -13.92330 -13.54757 -13.06748 -12.63543 -12.42905 -11.92673 -11.57365 -11.35163 -11.16577 -10.95821 -10.90307 -10.56453 -10.34133 -10.30108 -10.00065 -9.21236 -9.19071 -8.64106 -8.61971 -7.25964 -6.27624 -4.36117 1.61984 2.02755 3.16882 3.25281 3.28762 3.85771 4.26758 4.42112 4.52041 4.91303 5.06117 5.33134 5.42543 5.49097 5.57108 5.85381 5.94810 6.06249 6.14730 6.30409 6.32548 6.55494 6.75576 6.84175 6.93625 7.25825 7.45035 7.54696 7.69458 7.92793 8.16834 8.47781 8.68890 8.92676 9.31900 10.78752 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051540 B = 0.006174 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.140864 B = 4533.864744 C = 4780.026686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.352 3.648 4 N -0.581 5.581 5 C 0.165 3.835 6 C -0.297 4.297 7 C 0.443 3.557 8 N -0.683 5.683 9 C 0.267 3.733 10 H 0.045 0.955 11 C -0.153 4.153 12 C -0.533 4.533 13 H 0.064 0.936 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 N -0.592 5.592 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.156 0.844 27 H 0.143 0.857 28 H 0.398 0.602 29 H 0.014 0.986 30 H 0.094 0.906 31 H 0.032 0.968 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -8.050 4.984 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C 0.081 3.919 4 N -0.303 5.303 5 C 0.005 3.995 6 C -0.326 4.326 7 C 0.196 3.804 8 N -0.308 5.308 9 C 0.165 3.835 10 H 0.063 0.937 11 C -0.212 4.212 12 C -0.571 4.571 13 H 0.082 0.918 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.207 1.207 20 N -0.319 5.319 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.174 0.826 27 H 0.161 0.839 28 H 0.232 0.768 29 H 0.033 0.967 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.649 -8.466 4.978 10.866 hybrid contribution 0.795 1.173 -1.198 1.855 sum -3.854 -7.293 3.781 9.073 Atomic orbital electron populations 1.21652 0.94140 1.01749 1.02343 1.20232 0.96342 0.89037 1.03380 1.22653 0.89840 0.96152 0.83208 1.68147 1.21113 1.11283 1.29741 1.22694 0.89700 0.89498 0.97630 1.22253 1.13207 1.04190 0.92937 1.18780 0.86085 0.87529 0.87965 1.45539 1.66090 1.15753 1.03442 1.18924 0.91914 0.74161 0.98522 0.93742 1.22200 0.97819 1.04107 0.97078 1.21195 1.35765 0.97876 1.02300 0.91777 1.24864 0.95755 0.95592 0.97347 1.69869 1.44485 1.03467 1.34477 0.86332 0.79320 0.78379 0.82779 1.19643 1.20745 1.20749 1.67769 1.23160 1.09918 1.31025 0.92477 0.92440 0.92044 0.89825 0.89752 0.82649 0.83885 0.76753 0.96725 0.88729 0.94913 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.90 37.16 0.37 -1.28 16 2 C -0.05 -0.68 6.37 -27.89 -0.18 -0.85 16 3 C 0.35 6.20 6.90 -157.24 -1.08 5.11 16 4 N -0.58 -10.29 10.33 -10.81 -0.11 -10.40 16 5 C 0.16 2.79 11.29 -17.29 -0.20 2.59 16 6 C -0.30 -5.66 8.93 -39.11 -0.35 -6.01 16 7 C 0.44 9.12 7.69 -154.78 -1.19 7.93 16 8 N -0.68 -14.61 5.22 -54.90 -0.29 -14.90 16 9 C 0.27 6.33 2.26 -69.08 -0.16 6.17 16 10 H 0.04 1.13 6.51 -51.93 -0.34 0.80 16 11 C -0.15 -3.52 9.23 37.16 0.34 -3.18 16 12 C -0.53 -13.71 8.73 -34.44 -0.30 -14.01 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 14 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -23.55 11.32 55.43 0.63 -22.92 16 16 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 N -0.59 -11.60 10.37 -9.97 -0.10 -11.70 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 27 H 0.14 2.74 6.31 -52.49 -0.33 2.41 16 28 H 0.40 8.23 8.66 -40.82 -0.35 7.88 16 29 H 0.01 0.30 7.76 -51.93 -0.40 -0.11 16 30 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 272.96 15.07 4.11 4.11 Total: -1.00 -27.51 272.96 -7.86 -35.37 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.24 Total: 7.17 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.84 Total: -1.87 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.13 Total: -59.93 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.51 -7.86 -35.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333360234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.113 kcal (2) G-P(sol) polarization free energy of solvation -27.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds