Wall clock time and date at job start Sun Mar 29 2020 22:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50690 * 109.47319 * 2 1 4 4 N 1.31793 * 119.08318 * 89.99725 * 3 2 1 5 5 C 1.32554 * 121.00960 * 180.02562 * 4 3 2 6 6 C 1.38113 * 119.20036 * 0.02562 * 5 4 3 7 7 C 1.39627 * 118.33326 * 0.02562 * 6 5 4 8 8 N 1.38545 * 120.53282 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99593 * 359.97438 * 8 7 6 10 10 H 1.08995 * 109.47531 * 35.00800 * 9 8 7 11 11 C 1.53004 * 109.47542 * 275.00324 * 9 8 7 12 12 C 1.50707 * 109.46900 * 155.00426 * 9 8 7 13 13 H 1.07998 * 119.99692 * 0.02562 * 12 9 8 14 14 C 1.37872 * 119.99832 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00252 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 119.99737 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46803 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46834 * 119.99875 * 16 14 12 19 19 H 1.48496 * 109.47355 * 240.00242 * 16 14 12 20 20 N 1.31749 * 119.08839 * 270.00110 * 3 2 1 21 21 H 1.08997 * 109.46958 * 299.99865 * 1 2 3 22 22 H 1.08998 * 109.47057 * 60.00245 * 1 2 3 23 23 H 1.09004 * 109.46971 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46705 * 239.99692 * 2 1 3 25 25 H 1.09001 * 109.46819 * 120.00224 * 2 1 3 26 26 H 1.08000 * 120.39633 * 179.97438 * 5 4 3 27 27 H 1.07998 * 120.83717 * 180.02562 * 6 5 4 28 28 H 0.96996 * 119.99998 * 179.97438 * 8 7 6 29 29 H 1.09001 * 109.46891 * 60.00202 * 11 9 8 30 30 H 1.08999 * 109.47222 * 180.02562 * 11 9 8 31 31 H 1.09003 * 109.46927 * 300.00422 * 11 9 8 32 32 H 0.97003 * 120.00114 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6870 3.2739 1.1963 6 6 2.9241 3.9473 0.0140 7 6 2.6866 3.2788 -1.1885 8 7 2.9095 3.9107 -2.4011 9 6 3.3978 5.2917 -2.4284 10 1 4.0803 5.4524 -1.5939 11 6 2.2138 6.2538 -2.3116 12 6 4.1228 5.5426 -3.7257 13 1 4.2106 4.7525 -4.4567 14 6 4.6729 6.7810 -3.9795 15 7 4.5655 7.7432 -3.0895 16 14 5.5722 7.0918 -5.5871 17 1 5.5538 5.8566 -6.4112 18 1 4.8990 8.1896 -6.3266 19 1 6.9778 7.4762 -5.3018 20 7 2.2459 2.0246 -1.1513 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.8582 3.7594 2.1457 27 1 3.2841 4.9655 0.0195 28 1 2.7424 3.4388 -3.2319 29 1 1.6895 6.0723 -1.3734 30 1 2.5771 7.2812 -2.3324 31 1 1.5314 6.0931 -3.1462 32 1 4.9529 8.6145 -3.2680 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333360234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:23 Heat of formation + Delta-G solvation = 17.727462 kcal Electronic energy + Delta-G solvation = -14629.700240 eV Core-core repulsion = 12203.126940 eV Total energy + Delta-G solvation = -2426.573300 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.79239 -38.15081 -35.30188 -34.85826 -33.41440 -31.17408 -30.06567 -27.37863 -25.82903 -24.58663 -23.27454 -21.62276 -19.56533 -18.13657 -17.84058 -16.83239 -16.30949 -15.98167 -15.46786 -15.36076 -14.76478 -14.52809 -14.22209 -14.11760 -13.38028 -13.06255 -12.95898 -12.75446 -12.56070 -12.37661 -12.18308 -11.98228 -11.87526 -11.48124 -11.11232 -10.72554 -10.53425 -10.09267 -8.88187 -8.24019 -6.39248 0.20811 0.53516 1.40961 1.43687 1.54258 2.22648 2.46275 2.99564 3.07750 3.24903 3.57708 3.96229 4.34700 4.37604 4.46245 4.46871 4.63837 4.79238 4.88170 4.93653 4.99136 5.04533 5.17807 5.28823 5.34864 5.52035 5.63188 5.79159 5.88383 6.05906 6.50292 6.66592 6.90946 7.30793 7.45383 8.81876 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051540 B = 0.006174 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.140864 B = 4533.864744 C = 4780.026686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 C 0.343 3.657 4 N -0.583 5.583 5 C 0.176 3.824 6 C -0.315 4.315 7 C 0.426 3.574 8 N -0.689 5.689 9 C 0.277 3.723 10 H 0.023 0.977 11 C -0.139 4.139 12 C -0.551 4.551 13 H 0.061 0.939 14 C 0.025 3.975 15 N -0.909 5.909 16 Si 0.967 3.033 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.279 1.279 20 N -0.605 5.605 21 H 0.051 0.949 22 H 0.042 0.958 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.195 0.805 27 H 0.136 0.864 28 H 0.398 0.602 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 -9.140 5.430 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 C 0.073 3.927 4 N -0.304 5.304 5 C 0.015 3.985 6 C -0.344 4.344 7 C 0.180 3.820 8 N -0.316 5.316 9 C 0.174 3.826 10 H 0.041 0.959 11 C -0.198 4.198 12 C -0.590 4.590 13 H 0.079 0.921 14 C -0.176 4.176 15 N -0.547 5.547 16 Si 0.792 3.208 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.205 1.205 20 N -0.331 5.331 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.121 0.879 26 H 0.212 0.788 27 H 0.154 0.846 28 H 0.233 0.767 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.913 -9.587 5.441 12.069 hybrid contribution 0.845 1.433 -1.230 2.069 sum -4.068 -8.154 4.210 10.038 Atomic orbital electron populations 1.21618 0.92755 1.03504 1.01332 1.20430 0.97367 0.86514 1.04641 1.23561 0.88757 0.97683 0.82657 1.68300 1.20977 1.11473 1.29636 1.23299 0.87633 0.89125 0.98416 1.22319 1.14450 1.04223 0.93383 1.19001 0.86729 0.88274 0.87960 1.45260 1.67257 1.15078 1.04016 1.18600 0.91564 0.75521 0.96906 0.95928 1.22012 0.97531 1.02737 0.97552 1.21474 1.36350 0.98086 1.03049 0.92100 1.25606 0.96388 0.95377 1.00264 1.69968 1.45034 1.03784 1.35927 0.85376 0.78099 0.78197 0.79159 1.19388 1.20262 1.20488 1.67827 1.23575 1.09568 1.32174 0.92958 0.93914 0.88943 0.89090 0.87923 0.78829 0.84570 0.76690 0.95543 0.90670 0.95123 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.90 71.98 0.71 -2.09 16 2 C -0.05 -1.23 6.37 29.85 0.19 -1.04 16 3 C 0.34 11.54 6.90 138.76 0.96 12.49 16 4 N -0.58 -19.42 10.33 -188.12 -1.94 -21.36 16 5 C 0.18 5.63 11.29 84.55 0.95 6.59 16 6 C -0.32 -11.91 8.93 22.58 0.20 -11.71 16 7 C 0.43 17.52 7.69 133.16 1.02 18.55 16 8 N -0.69 -29.94 5.22 -327.62 -1.71 -31.65 16 9 C 0.28 13.39 2.26 44.25 0.10 13.49 16 10 H 0.02 1.20 6.51 -2.39 -0.02 1.18 16 11 C -0.14 -6.50 9.23 71.98 0.66 -5.84 16 12 C -0.55 -28.67 8.73 25.60 0.22 -28.45 16 13 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 14 C 0.02 1.28 5.30 84.65 0.45 1.73 16 15 N -0.91 -48.75 11.32 21.44 0.24 -48.51 16 16 Si 0.97 41.26 29.54 68.60 2.03 43.29 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 20 N -0.60 -23.32 10.37 -185.45 -1.92 -25.25 16 21 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.19 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.14 5.29 6.31 -2.91 -0.02 5.27 16 28 H 0.40 16.78 8.66 -92.71 -0.80 15.98 16 29 H 0.03 1.12 7.76 -2.39 -0.02 1.10 16 30 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -57.92 272.96 2.49 -55.43 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.32 Total: 24.32 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.48 Total: 3.73 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -5.33 Total: -126.77 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -57.92 2.49 -55.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333360234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.159 kcal (2) G-P(sol) polarization free energy of solvation -57.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds