Wall clock time and date at job start Sun Mar 29 2020 22:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47225 * 2 1 4 4 N 1.31780 * 119.08359 * 270.00183 * 3 2 1 5 5 C 1.32547 * 121.01245 * 180.02562 * 4 3 2 6 6 C 1.38117 * 119.19691 * 359.97438 * 5 4 3 7 7 C 1.39620 * 118.33540 * 0.02562 * 6 5 4 8 8 N 1.38544 * 120.53769 * 179.97438 * 7 6 5 9 9 C 1.46501 * 119.99392 * 0.02562 * 8 7 6 10 10 H 1.09001 * 109.47301 * 325.00504 * 9 8 7 11 11 C 1.53005 * 109.46967 * 85.00231 * 9 8 7 12 12 C 1.50700 * 109.47260 * 205.00178 * 9 8 7 13 13 H 1.08004 * 119.99622 * 359.97438 * 12 9 8 14 14 C 1.37873 * 120.00209 * 180.02562 * 12 9 8 15 15 N 1.31506 * 120.00249 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99818 * 180.02562 * 14 12 9 17 17 H 1.48489 * 109.47570 * 59.99554 * 16 14 12 18 18 H 1.48501 * 109.46891 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46904 * 299.99300 * 16 14 12 20 20 N 1.31754 * 119.08049 * 90.00200 * 3 2 1 21 21 H 1.09006 * 109.47261 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47004 * 299.99965 * 1 2 3 23 23 H 1.08992 * 109.47324 * 60.00072 * 1 2 3 24 24 H 1.09003 * 109.47004 * 240.00035 * 2 1 3 25 25 H 1.09003 * 109.46927 * 120.00137 * 2 1 3 26 26 H 1.08003 * 120.40420 * 180.02562 * 5 4 3 27 27 H 1.07999 * 120.83184 * 180.02562 * 6 5 4 28 28 H 0.96992 * 120.00456 * 180.02562 * 8 7 6 29 29 H 1.09001 * 109.47193 * 299.99660 * 11 9 8 30 30 H 1.08993 * 109.47086 * 59.99738 * 11 9 8 31 31 H 1.09000 * 109.46960 * 179.97438 * 11 9 8 32 32 H 0.97002 * 120.00160 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2458 2.0248 -1.1516 5 6 2.6879 3.2735 -1.1963 6 6 2.9259 3.9467 -0.0139 7 6 2.6895 3.2778 1.1886 8 7 2.9134 3.9093 2.4012 9 6 3.4016 5.2903 2.4286 10 1 4.0833 5.4513 1.5934 11 6 2.2174 6.2523 2.3132 12 6 4.1278 5.5408 3.7251 13 1 4.2163 4.7504 4.4559 14 6 4.6782 6.7792 3.9789 15 7 4.5700 7.7417 3.0894 16 14 5.5789 7.0893 5.5858 17 1 6.7285 6.1561 5.6971 18 1 6.0737 8.4892 5.6136 19 1 4.6507 6.8693 6.7240 20 7 2.2458 2.0246 1.1514 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.8591 3.7592 -2.1456 27 1 3.2859 4.9649 -0.0195 28 1 2.7469 3.4372 3.2320 29 1 1.6923 6.0712 1.3754 30 1 1.5358 6.0913 3.1483 31 1 2.5807 7.2798 2.3340 32 1 4.9575 8.6128 3.2678 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333360288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:31 Heat of formation + Delta-G solvation = 33.825178 kcal Electronic energy + Delta-G solvation = -14628.826491 eV Core-core repulsion = 12202.951240 eV Total energy + Delta-G solvation = -2425.875250 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34611 -36.47832 -33.82951 -33.35371 -31.78662 -29.73456 -28.36539 -25.41933 -24.59374 -23.08748 -21.78719 -20.02762 -17.90396 -16.64326 -16.07137 -14.99759 -14.86611 -14.54487 -13.97471 -13.92661 -13.55137 -13.06603 -12.63471 -12.41962 -11.92235 -11.57212 -11.34824 -11.14760 -10.95711 -10.92217 -10.57593 -10.33297 -10.30084 -10.00179 -9.22223 -9.19812 -8.63755 -8.61322 -7.25916 -6.27056 -4.35807 1.62016 2.02827 3.19678 3.24652 3.26602 3.85745 4.27001 4.42200 4.52029 4.91338 5.06430 5.33160 5.42577 5.49147 5.57178 5.85407 5.94811 6.06287 6.14768 6.30450 6.32595 6.55662 6.75718 6.84254 6.93712 7.25938 7.45057 7.54621 7.69484 7.93047 8.16997 8.47737 8.68727 8.92678 9.32060 10.79206 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051553 B = 0.006174 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.996978 B = 4534.269614 C = 4780.300312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.352 3.648 4 N -0.581 5.581 5 C 0.165 3.835 6 C -0.297 4.297 7 C 0.443 3.557 8 N -0.683 5.683 9 C 0.268 3.732 10 H 0.045 0.955 11 C -0.153 4.153 12 C -0.535 4.535 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 N -0.592 5.592 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.156 0.844 27 H 0.143 0.857 28 H 0.398 0.602 29 H 0.014 0.986 30 H 0.032 0.968 31 H 0.094 0.906 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -8.020 -4.986 10.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C 0.081 3.919 4 N -0.303 5.303 5 C 0.005 3.995 6 C -0.326 4.326 7 C 0.196 3.804 8 N -0.308 5.308 9 C 0.166 3.834 10 H 0.062 0.938 11 C -0.212 4.212 12 C -0.573 4.573 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.732 3.268 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.319 5.319 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.174 0.826 27 H 0.161 0.839 28 H 0.232 0.768 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.113 0.887 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.644 -8.426 -4.985 10.835 hybrid contribution 0.796 1.149 1.211 1.849 sum -3.847 -7.277 -3.774 9.055 Atomic orbital electron populations 1.21651 0.94143 1.01748 1.02344 1.20234 0.96343 0.89034 1.03378 1.22654 0.89850 0.96145 0.83210 1.68137 1.21105 1.11294 1.29746 1.22694 0.89695 0.89501 0.97630 1.22252 1.13214 1.04183 0.92937 1.18781 0.86080 0.87536 0.87965 1.45538 1.66091 1.15757 1.03440 1.18912 0.91895 0.74153 0.98487 0.93752 1.22200 0.97820 1.04110 0.97075 1.21118 1.35933 0.97866 1.02377 0.91887 1.24858 0.95734 0.95574 0.97335 1.69848 1.44394 1.03493 1.34562 0.86439 0.79961 0.77373 0.82997 1.20077 1.21010 1.20043 1.67778 1.23119 1.09960 1.31015 0.92046 0.92446 0.92472 0.89751 0.89826 0.82647 0.83884 0.76759 0.96730 0.94916 0.88730 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.89 37.16 0.37 -1.28 16 2 C -0.05 -0.68 6.37 -27.88 -0.18 -0.85 16 3 C 0.35 6.20 6.90 -157.24 -1.08 5.11 16 4 N -0.58 -10.29 10.33 -10.81 -0.11 -10.40 16 5 C 0.16 2.79 11.29 -17.29 -0.20 2.59 16 6 C -0.30 -5.66 8.93 -39.11 -0.35 -6.01 16 7 C 0.44 9.12 7.69 -154.77 -1.19 7.93 16 8 N -0.68 -14.62 5.22 -54.90 -0.29 -14.90 16 9 C 0.27 6.35 2.26 -69.08 -0.16 6.19 16 10 H 0.04 1.13 6.51 -51.93 -0.34 0.79 16 11 C -0.15 -3.53 9.23 37.16 0.34 -3.18 16 12 C -0.53 -13.75 8.73 -34.44 -0.30 -14.05 16 13 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 14 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 15 N -0.89 -23.56 11.32 55.43 0.63 -22.93 16 16 Si 0.91 20.17 29.54 -169.99 -5.02 15.15 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 N -0.59 -11.60 10.37 -9.97 -0.10 -11.71 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.16 2.06 8.06 -52.48 -0.42 1.64 16 27 H 0.14 2.74 6.31 -52.49 -0.33 2.41 16 28 H 0.40 8.23 8.66 -40.82 -0.35 7.87 16 29 H 0.01 0.30 7.77 -51.93 -0.40 -0.11 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 272.96 15.07 4.11 4.11 Total: -1.00 -27.47 272.96 -7.86 -35.33 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.24 Total: 7.22 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.84 Total: -1.87 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.13 Total: -59.94 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.47 -7.86 -35.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333360288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.153 kcal (2) G-P(sol) polarization free energy of solvation -27.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds