Wall clock time and date at job start Sun Mar 29 2020 22:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47225 * 2 1 4 4 N 1.31780 * 119.08359 * 270.00183 * 3 2 1 5 5 C 1.32547 * 121.01245 * 180.02562 * 4 3 2 6 6 C 1.38117 * 119.19691 * 359.97438 * 5 4 3 7 7 C 1.39620 * 118.33540 * 0.02562 * 6 5 4 8 8 N 1.38544 * 120.53769 * 179.97438 * 7 6 5 9 9 C 1.46501 * 119.99392 * 0.02562 * 8 7 6 10 10 H 1.09001 * 109.47301 * 325.00504 * 9 8 7 11 11 C 1.53005 * 109.46967 * 85.00231 * 9 8 7 12 12 C 1.50700 * 109.47260 * 205.00178 * 9 8 7 13 13 H 1.08004 * 119.99622 * 359.97438 * 12 9 8 14 14 C 1.37873 * 120.00209 * 180.02562 * 12 9 8 15 15 N 1.31506 * 120.00249 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99818 * 180.02562 * 14 12 9 17 17 H 1.48489 * 109.47570 * 59.99554 * 16 14 12 18 18 H 1.48501 * 109.46891 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46904 * 299.99300 * 16 14 12 20 20 N 1.31754 * 119.08049 * 90.00200 * 3 2 1 21 21 H 1.09006 * 109.47261 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47004 * 299.99965 * 1 2 3 23 23 H 1.08992 * 109.47324 * 60.00072 * 1 2 3 24 24 H 1.09003 * 109.47004 * 240.00035 * 2 1 3 25 25 H 1.09003 * 109.46927 * 120.00137 * 2 1 3 26 26 H 1.08003 * 120.40420 * 180.02562 * 5 4 3 27 27 H 1.07999 * 120.83184 * 180.02562 * 6 5 4 28 28 H 0.96992 * 120.00456 * 180.02562 * 8 7 6 29 29 H 1.09001 * 109.47193 * 299.99660 * 11 9 8 30 30 H 1.08993 * 109.47086 * 59.99738 * 11 9 8 31 31 H 1.09000 * 109.46960 * 179.97438 * 11 9 8 32 32 H 0.97002 * 120.00160 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2458 2.0248 -1.1516 5 6 2.6879 3.2735 -1.1963 6 6 2.9259 3.9467 -0.0139 7 6 2.6895 3.2778 1.1886 8 7 2.9134 3.9093 2.4012 9 6 3.4016 5.2903 2.4286 10 1 4.0833 5.4513 1.5934 11 6 2.2174 6.2523 2.3132 12 6 4.1278 5.5408 3.7251 13 1 4.2163 4.7504 4.4559 14 6 4.6782 6.7792 3.9789 15 7 4.5700 7.7417 3.0894 16 14 5.5789 7.0893 5.5858 17 1 6.7285 6.1561 5.6971 18 1 6.0737 8.4892 5.6136 19 1 4.6507 6.8693 6.7240 20 7 2.2458 2.0246 1.1514 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.8591 3.7592 -2.1456 27 1 3.2859 4.9649 -0.0195 28 1 2.7469 3.4372 3.2320 29 1 1.6923 6.0712 1.3754 30 1 1.5358 6.0913 3.1483 31 1 2.5807 7.2798 2.3340 32 1 4.9575 8.6128 3.2678 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333360288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:31 Heat of formation + Delta-G solvation = 17.845558 kcal Electronic energy + Delta-G solvation = -14629.519419 eV Core-core repulsion = 12202.951240 eV Total energy + Delta-G solvation = -2426.568179 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.79304 -38.15034 -35.30019 -34.85828 -33.41349 -31.17391 -30.06560 -27.37381 -25.82859 -24.58648 -23.27360 -21.62163 -19.56404 -18.13466 -17.83487 -16.83109 -16.30725 -15.98324 -15.47418 -15.36009 -14.76506 -14.52346 -14.22204 -14.10892 -13.37273 -13.06602 -12.94108 -12.76985 -12.56069 -12.37603 -12.18180 -11.98085 -11.87408 -11.48314 -11.13146 -10.72036 -10.52768 -10.09304 -8.88172 -8.23441 -6.38930 0.20801 0.53535 1.43699 1.43842 1.51932 2.22639 2.46612 2.99611 3.08122 3.24863 3.57720 3.96259 4.34657 4.37608 4.46257 4.46892 4.63894 4.79264 4.88174 4.93641 4.99191 5.04503 5.17829 5.28851 5.34873 5.51786 5.63223 5.79167 5.88545 6.05968 6.50301 6.66394 6.91012 7.30943 7.45402 8.82005 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051553 B = 0.006174 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.996978 B = 4534.269614 C = 4780.300312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 C 0.343 3.657 4 N -0.583 5.583 5 C 0.176 3.824 6 C -0.315 4.315 7 C 0.426 3.574 8 N -0.689 5.689 9 C 0.278 3.722 10 H 0.023 0.977 11 C -0.139 4.139 12 C -0.554 4.554 13 H 0.061 0.939 14 C 0.025 3.975 15 N -0.909 5.909 16 Si 0.966 3.034 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.270 1.270 20 N -0.605 5.605 21 H 0.092 0.908 22 H 0.042 0.958 23 H 0.051 0.949 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.195 0.805 27 H 0.136 0.864 28 H 0.398 0.602 29 H 0.025 0.975 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 -9.121 -5.419 11.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.089 4.089 3 C 0.073 3.927 4 N -0.304 5.304 5 C 0.015 3.985 6 C -0.344 4.344 7 C 0.180 3.820 8 N -0.316 5.316 9 C 0.175 3.825 10 H 0.041 0.959 11 C -0.198 4.198 12 C -0.592 4.592 13 H 0.079 0.921 14 C -0.176 4.176 15 N -0.547 5.547 16 Si 0.791 3.209 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.195 1.195 20 N -0.331 5.331 21 H 0.111 0.889 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.121 0.879 25 H 0.109 0.891 26 H 0.212 0.788 27 H 0.154 0.846 28 H 0.233 0.767 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.912 -9.559 -5.433 12.042 hybrid contribution 0.846 1.410 1.238 2.059 sum -4.066 -8.149 -4.194 10.026 Atomic orbital electron populations 1.21617 0.92759 1.03502 1.01332 1.20432 0.97367 0.86509 1.04640 1.23562 0.88768 0.97677 0.82659 1.68291 1.20969 1.11481 1.29640 1.23299 0.87627 0.89127 0.98415 1.22319 1.14460 1.04215 0.93384 1.19002 0.86725 0.88283 0.87963 1.45259 1.67257 1.15080 1.04016 1.18590 0.91545 0.75515 0.96881 0.95946 1.22012 0.97530 1.02749 0.97538 1.21420 1.36498 0.98117 1.03154 0.92080 1.25603 0.96369 0.95356 1.00258 1.69954 1.44943 1.03760 1.36003 0.85484 0.78761 0.77229 0.79407 1.19917 1.20570 1.19534 1.67836 1.23531 1.09609 1.32163 0.88944 0.93922 0.92952 0.87922 0.89090 0.78825 0.84571 0.76687 0.95552 0.95145 0.90660 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.89 71.98 0.71 -2.09 16 2 C -0.05 -1.23 6.37 29.85 0.19 -1.04 16 3 C 0.34 11.54 6.90 138.77 0.96 12.49 16 4 N -0.58 -19.42 10.33 -188.11 -1.94 -21.37 16 5 C 0.18 5.64 11.29 84.56 0.95 6.59 16 6 C -0.32 -11.92 8.93 22.57 0.20 -11.71 16 7 C 0.43 17.52 7.69 133.16 1.02 18.55 16 8 N -0.69 -29.95 5.22 -327.62 -1.71 -31.66 16 9 C 0.28 13.43 2.26 44.25 0.10 13.53 16 10 H 0.02 1.19 6.51 -2.39 -0.02 1.17 16 11 C -0.14 -6.51 9.23 71.98 0.66 -5.84 16 12 C -0.55 -28.79 8.73 25.60 0.22 -28.56 16 13 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 14 C 0.03 1.31 5.30 84.65 0.45 1.76 16 15 N -0.91 -48.75 11.32 21.44 0.24 -48.50 16 16 Si 0.97 41.22 29.54 68.60 2.03 43.24 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 20 N -0.60 -23.33 10.37 -185.44 -1.92 -25.25 16 21 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.19 4.56 8.06 -2.91 -0.02 4.53 16 27 H 0.14 5.29 6.31 -2.91 -0.02 5.28 16 28 H 0.40 16.77 8.66 -92.71 -0.80 15.96 16 29 H 0.03 1.12 7.77 -2.39 -0.02 1.10 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 32 H 0.27 13.69 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -57.84 272.96 2.49 -55.36 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.32 Total: 24.50 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.48 Total: 3.68 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -5.33 Total: -126.78 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -57.84 2.49 -55.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333360288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.203 kcal (2) G-P(sol) polarization free energy of solvation -57.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds