Wall clock time and date at job start Sun Mar 29 2020 22:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50690 * 109.47319 * 2 1 4 4 N 1.31793 * 119.08318 * 89.99725 * 3 2 1 5 5 C 1.32554 * 121.00960 * 180.02562 * 4 3 2 6 6 C 1.38113 * 119.20036 * 0.02562 * 5 4 3 7 7 C 1.39627 * 118.33326 * 0.02562 * 6 5 4 8 8 N 1.38545 * 120.53282 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99593 * 359.97438 * 8 7 6 10 10 C 1.53001 * 109.46783 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46928 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00521 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99942 * 180.02562 * 11 10 9 14 14 N 1.31521 * 120.00104 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00054 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47283 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47152 * 120.00030 * 15 13 11 18 18 H 1.48502 * 109.47217 * 239.99440 * 15 13 11 19 19 N 1.31749 * 119.08839 * 270.00110 * 3 2 1 20 20 H 1.09004 * 109.46971 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46958 * 299.99865 * 1 2 3 22 22 H 1.08998 * 109.47057 * 60.00245 * 1 2 3 23 23 H 1.09001 * 109.46705 * 239.99692 * 2 1 3 24 24 H 1.09001 * 109.46819 * 120.00224 * 2 1 3 25 25 H 1.08000 * 120.39633 * 179.97438 * 5 4 3 26 26 H 1.07998 * 120.83717 * 180.02562 * 6 5 4 27 27 H 0.96996 * 119.99998 * 179.97438 * 8 7 6 28 28 H 1.08999 * 109.47661 * 300.00719 * 9 8 7 29 29 H 1.08996 * 109.46948 * 60.00907 * 9 8 7 30 30 H 1.09003 * 109.47203 * 299.99713 * 10 9 8 31 31 H 1.09000 * 109.47570 * 60.00295 * 10 9 8 32 32 H 0.97000 * 119.99986 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6870 3.2739 1.1963 6 6 2.9241 3.9473 0.0140 7 6 2.6866 3.2788 -1.1885 8 7 2.9095 3.9107 -2.4011 9 6 3.3978 5.2917 -2.4284 10 6 3.5576 5.7474 -3.8802 11 6 4.0605 7.1678 -3.9084 12 1 4.2470 7.6931 -2.9834 13 6 4.2814 7.7971 -5.1151 14 7 4.0538 7.1576 -6.2417 15 14 4.9040 9.5579 -5.1501 16 1 5.0788 10.0488 -3.7596 17 1 6.2070 9.6082 -5.8607 18 1 3.9208 10.4167 -5.8579 19 7 2.2459 2.0246 -1.1513 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.8582 3.7594 2.1457 26 1 3.2841 4.9655 0.0195 27 1 2.7424 3.4388 -3.2319 28 1 2.6833 5.9399 -1.9210 29 1 4.3614 5.3464 -1.9220 30 1 4.2720 5.0994 -4.3880 31 1 2.5939 5.6928 -4.3865 32 1 4.2089 7.6005 -7.0906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333391286.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:14 Heat of formation + Delta-G solvation = 27.514655 kcal Electronic energy + Delta-G solvation = -14109.893672 eV Core-core repulsion = 11683.744777 eV Total energy + Delta-G solvation = -2426.148895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.65879 -36.58201 -34.00557 -33.51224 -32.27238 -30.24345 -28.91270 -25.25099 -24.52524 -23.18118 -21.69029 -20.62113 -17.72037 -17.11315 -16.22908 -15.14956 -14.96548 -14.67458 -14.32952 -14.27338 -13.87206 -13.75209 -13.26025 -12.40265 -12.32830 -11.73282 -11.40846 -11.34978 -11.09334 -10.96295 -10.69619 -10.36785 -10.26728 -9.74769 -9.45907 -9.39171 -8.92772 -8.52678 -7.73329 -6.17265 -4.21617 1.30672 1.68691 3.22609 3.29852 3.33010 3.43773 4.11585 4.24603 4.34489 4.61699 5.05949 5.19898 5.21187 5.29450 5.34585 5.52327 5.78844 5.81930 5.86117 5.96653 6.08170 6.13939 6.16150 6.51730 6.56982 7.04675 7.37829 7.49597 7.64748 7.80516 7.93960 8.18369 8.57881 8.84139 9.43884 10.94282 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.061572 B = 0.004740 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.644909 B = 5906.263175 C = 6256.402217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C 0.356 3.644 4 N -0.574 5.574 5 C 0.171 3.829 6 C -0.300 4.300 7 C 0.441 3.559 8 N -0.699 5.699 9 C 0.124 3.876 10 C 0.013 3.987 11 C -0.525 4.525 12 H 0.060 0.940 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.898 3.102 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 N -0.585 5.585 20 H 0.063 0.937 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.160 0.840 26 H 0.141 0.859 27 H 0.406 0.594 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 -9.363 11.452 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 C 0.086 3.914 4 N -0.294 5.294 5 C 0.010 3.990 6 C -0.329 4.329 7 C 0.195 3.805 8 N -0.328 5.328 9 C 0.001 3.999 10 C -0.025 4.025 11 C -0.564 4.564 12 H 0.078 0.922 13 C -0.142 4.142 14 N -0.530 5.530 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 N -0.310 5.310 20 H 0.082 0.918 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.177 0.823 26 H 0.159 0.841 27 H 0.242 0.758 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.121 -9.977 11.237 15.582 hybrid contribution 0.664 1.855 -0.556 2.047 sum -3.458 -8.123 10.681 13.857 Atomic orbital electron populations 1.21661 0.93893 1.02024 1.02402 1.20280 0.96531 0.88687 1.03675 1.22764 0.89366 0.96297 0.82944 1.68197 1.20274 1.11220 1.29746 1.22769 0.89035 0.89437 0.97715 1.22176 1.13804 1.03896 0.92986 1.18714 0.86469 0.87836 0.87497 1.45169 1.67945 1.15252 1.04400 1.21907 0.97423 0.77957 1.02564 1.19312 0.98066 0.96883 0.88223 1.21024 1.45118 0.97488 0.92727 0.92166 1.25008 0.95285 0.98405 0.95548 1.69969 1.48331 1.37212 0.97447 0.86442 0.78536 0.84246 0.78247 1.19584 1.20862 1.20868 1.67769 1.22393 1.09644 1.31222 0.91817 0.92423 0.92357 0.89585 0.89514 0.82266 0.84070 0.75829 0.92516 0.92508 0.95712 0.95711 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.90 37.16 0.37 -1.08 16 2 C -0.05 -0.61 6.37 -27.89 -0.18 -0.79 16 3 C 0.36 5.49 6.90 -157.24 -1.08 4.41 16 4 N -0.57 -8.77 10.33 -10.81 -0.11 -8.88 16 5 C 0.17 2.40 11.29 -17.29 -0.20 2.20 16 6 C -0.30 -4.63 9.40 -39.11 -0.37 -5.00 16 7 C 0.44 7.68 7.71 -154.78 -1.19 6.49 16 8 N -0.70 -12.56 5.71 -60.27 -0.34 -12.90 16 9 C 0.12 2.41 4.87 -4.04 -0.02 2.39 16 10 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 11 C -0.52 -13.99 9.11 -34.44 -0.31 -14.30 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 15 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 N -0.58 -10.05 10.37 -9.97 -0.10 -10.15 16 20 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 26 H 0.14 2.01 6.87 -52.49 -0.36 1.65 16 27 H 0.41 7.20 8.60 -40.82 -0.35 6.85 16 28 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 29 H 0.06 1.08 7.97 -51.93 -0.41 0.66 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 279.14 15.07 4.21 4.21 Total: -1.00 -29.64 279.14 -8.32 -37.96 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.46 Total: 2.99 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -3.22 Total: -3.98 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.18 Total: -56.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.64 -8.32 -37.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333391286.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.475 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds