Wall clock time and date at job start Sun Mar 29 2020 22:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50690 * 109.47319 * 2 1 4 4 N 1.31793 * 119.08318 * 89.99725 * 3 2 1 5 5 C 1.32554 * 121.00960 * 180.02562 * 4 3 2 6 6 C 1.38113 * 119.20036 * 0.02562 * 5 4 3 7 7 C 1.39627 * 118.33326 * 0.02562 * 6 5 4 8 8 N 1.38545 * 120.53282 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99593 * 359.97438 * 8 7 6 10 10 C 1.53001 * 109.46783 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46928 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00521 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99942 * 180.02562 * 11 10 9 14 14 N 1.31521 * 120.00104 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00054 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47283 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47152 * 120.00030 * 15 13 11 18 18 H 1.48502 * 109.47217 * 239.99440 * 15 13 11 19 19 N 1.31749 * 119.08839 * 270.00110 * 3 2 1 20 20 H 1.09004 * 109.46971 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46958 * 299.99865 * 1 2 3 22 22 H 1.08998 * 109.47057 * 60.00245 * 1 2 3 23 23 H 1.09001 * 109.46705 * 239.99692 * 2 1 3 24 24 H 1.09001 * 109.46819 * 120.00224 * 2 1 3 25 25 H 1.08000 * 120.39633 * 179.97438 * 5 4 3 26 26 H 1.07998 * 120.83717 * 180.02562 * 6 5 4 27 27 H 0.96996 * 119.99998 * 179.97438 * 8 7 6 28 28 H 1.08999 * 109.47661 * 300.00719 * 9 8 7 29 29 H 1.08996 * 109.46948 * 60.00907 * 9 8 7 30 30 H 1.09003 * 109.47203 * 299.99713 * 10 9 8 31 31 H 1.09000 * 109.47570 * 60.00295 * 10 9 8 32 32 H 0.97000 * 119.99986 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6870 3.2739 1.1963 6 6 2.9241 3.9473 0.0140 7 6 2.6866 3.2788 -1.1885 8 7 2.9095 3.9107 -2.4011 9 6 3.3978 5.2917 -2.4284 10 6 3.5576 5.7474 -3.8802 11 6 4.0605 7.1678 -3.9084 12 1 4.2470 7.6931 -2.9834 13 6 4.2814 7.7971 -5.1151 14 7 4.0538 7.1576 -6.2417 15 14 4.9040 9.5579 -5.1501 16 1 5.0788 10.0488 -3.7596 17 1 6.2070 9.6082 -5.8607 18 1 3.9208 10.4167 -5.8579 19 7 2.2459 2.0246 -1.1513 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.8582 3.7594 2.1457 26 1 3.2841 4.9655 0.0195 27 1 2.7424 3.4388 -3.2319 28 1 2.6833 5.9399 -1.9210 29 1 4.3614 5.3464 -1.9220 30 1 4.2720 5.0994 -4.3880 31 1 2.5939 5.6928 -4.3865 32 1 4.2089 7.6005 -7.0906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333391286.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:14 Heat of formation + Delta-G solvation = 9.353935 kcal Electronic energy + Delta-G solvation = -14110.681180 eV Core-core repulsion = 11683.744777 eV Total energy + Delta-G solvation = -2426.936403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.86294 -38.00301 -35.42997 -34.93334 -33.77646 -31.62726 -30.41443 -26.87220 -25.79823 -24.38591 -23.26456 -21.96234 -19.10426 -18.62801 -17.88624 -16.53523 -16.38237 -16.19001 -15.69204 -15.61828 -15.26085 -14.77512 -14.35758 -14.26520 -13.48202 -13.26794 -13.02105 -12.65762 -12.56262 -12.47087 -11.96545 -11.83240 -11.66336 -11.53664 -11.36873 -10.72945 -10.58238 -10.15696 -9.07806 -8.25506 -6.37020 0.14288 0.44803 1.41838 1.42746 1.55480 2.05159 2.42129 2.93370 3.10237 3.19108 3.50368 3.85665 4.26405 4.32388 4.38206 4.43242 4.44068 4.45962 4.72232 4.80042 4.88531 5.03105 5.15744 5.24853 5.33804 5.46768 5.52657 5.70825 5.83026 6.10647 6.33506 6.59542 6.79112 7.33300 7.36243 8.87104 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.061572 B = 0.004740 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.644909 B = 5906.263175 C = 6256.402217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C 0.344 3.656 4 N -0.579 5.579 5 C 0.177 3.823 6 C -0.308 4.308 7 C 0.421 3.579 8 N -0.707 5.707 9 C 0.147 3.853 10 C 0.019 3.981 11 C -0.541 4.541 12 H 0.071 0.929 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.258 1.258 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.604 5.604 20 H 0.090 0.910 21 H 0.053 0.947 22 H 0.041 0.959 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.200 0.800 26 H 0.153 0.847 27 H 0.403 0.597 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.001 0.999 31 H 0.001 0.999 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.808 -9.089 13.396 16.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 C 0.075 3.925 4 N -0.299 5.299 5 C 0.016 3.984 6 C -0.336 4.336 7 C 0.177 3.823 8 N -0.336 5.336 9 C 0.024 3.976 10 C -0.019 4.019 11 C -0.579 4.579 12 H 0.089 0.911 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.793 3.207 16 H -0.181 1.181 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.330 5.330 20 H 0.109 0.891 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.108 0.892 24 H 0.122 0.878 25 H 0.217 0.783 26 H 0.171 0.829 27 H 0.238 0.762 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.026 -9.726 13.215 16.895 hybrid contribution 0.601 1.678 -1.100 2.094 sum -3.426 -8.048 12.116 14.943 Atomic orbital electron populations 1.21624 0.92822 1.03510 1.01359 1.20443 0.97316 0.86705 1.04696 1.23506 0.88797 0.97638 0.82549 1.68318 1.20256 1.11830 1.29525 1.23428 0.87227 0.88922 0.98826 1.22386 1.14015 1.04520 0.92716 1.18949 0.87291 0.88422 0.87653 1.44956 1.69063 1.14754 1.04852 1.21475 0.98094 0.78900 0.99158 1.19138 0.95890 0.95929 0.90934 1.21498 1.44625 0.98613 0.93206 0.91117 1.25959 0.95510 1.02929 0.95203 1.70100 1.49701 1.39206 0.98135 0.85339 0.77765 0.78772 0.78820 1.18119 1.20594 1.20602 1.67785 1.23013 1.09841 1.32382 0.89096 0.92829 0.93938 0.89158 0.87839 0.78333 0.82939 0.76211 0.91804 0.91786 0.98092 0.98091 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.90 71.98 0.71 -1.82 16 2 C -0.05 -1.13 6.37 29.85 0.19 -0.94 16 3 C 0.34 10.17 6.90 138.76 0.96 11.13 16 4 N -0.58 -16.48 10.33 -188.12 -1.94 -18.42 16 5 C 0.18 4.50 11.29 84.55 0.95 5.46 16 6 C -0.31 -9.01 9.40 22.58 0.21 -8.79 16 7 C 0.42 14.48 7.71 133.16 1.03 15.50 16 8 N -0.71 -25.64 5.71 -344.59 -1.97 -27.61 16 9 C 0.15 5.68 4.87 86.38 0.42 6.10 16 10 C 0.02 0.92 5.09 29.85 0.15 1.07 16 11 C -0.54 -28.87 9.11 25.60 0.23 -28.64 16 12 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.93 -54.76 13.29 21.45 0.28 -54.47 16 15 Si 0.97 42.35 29.54 68.60 2.03 44.37 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 N -0.60 -20.53 10.37 -185.45 -1.92 -22.45 16 20 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.20 3.32 8.06 -2.91 -0.02 3.30 16 26 H 0.15 4.03 6.87 -2.91 -0.02 4.01 16 27 H 0.40 14.81 8.60 -92.71 -0.80 14.01 16 28 H 0.06 2.37 7.97 -2.39 -0.02 2.35 16 29 H 0.06 2.37 7.97 -2.39 -0.02 2.35 16 30 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -63.36 279.14 2.11 -61.25 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.31 Total: 17.67 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 5.32 Total: -0.34 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -5.55 Total: -122.96 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -63.36 2.11 -61.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333391286.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.608 kcal (2) G-P(sol) polarization free energy of solvation -63.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds