Wall clock time and date at job start Sun Mar 29 2020 21:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47387 * 150.24205 * 3 2 1 5 5 C 1.36936 * 120.00127 * 95.89044 * 4 3 2 6 6 H 1.07998 * 119.99700 * 162.37928 * 5 4 3 7 7 C 1.38812 * 119.99787 * 342.64997 * 5 4 3 8 8 N 1.31614 * 120.00199 * 336.80281 * 7 5 4 9 9 Si 1.86808 * 119.99596 * 156.79706 * 7 5 4 10 10 H 1.48501 * 109.47020 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46694 * 120.00277 * 9 7 5 12 12 H 1.48491 * 109.46937 * 239.99925 * 9 7 5 13 13 C 1.46496 * 119.99783 * 275.89846 * 4 3 2 14 14 C 1.52997 * 109.47314 * 269.99503 * 13 4 3 15 15 H 1.09001 * 109.70466 * 304.42211 * 14 13 4 16 16 C 1.53501 * 109.71361 * 183.79405 * 14 13 4 17 17 C 1.53270 * 108.14999 * 177.89804 * 16 14 13 18 18 C 1.50442 * 109.43522 * 46.83318 * 17 16 14 19 19 C 1.30678 * 122.50155 * 342.52321 * 18 17 16 20 20 O 1.35137 * 123.34186 * 0.41003 * 19 18 17 21 21 H 4.40648 * 5.51403 * 180.02562 * 4 1 2 22 22 H 1.09003 * 109.47490 * 30.23682 * 3 2 1 23 23 H 1.09002 * 109.47347 * 270.24147 * 3 2 1 24 24 H 0.97006 * 119.99744 * 180.02562 * 8 7 5 25 25 H 1.08996 * 109.47480 * 29.99538 * 13 4 3 26 26 H 1.09002 * 109.47453 * 149.99508 * 13 4 3 27 27 H 1.09005 * 109.72240 * 297.57492 * 16 14 13 28 28 H 1.09000 * 109.72618 * 58.24559 * 16 14 13 29 29 H 1.09002 * 109.47155 * 286.84876 * 17 16 14 30 30 H 1.08999 * 109.48157 * 166.82868 * 17 16 14 31 31 H 1.08002 * 118.75105 * 162.54086 * 18 17 16 32 32 H 1.08001 * 118.33256 * 180.43065 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.1999 -0.6855 5 6 3.4763 2.3108 0.0383 6 1 4.0910 3.0781 -0.4087 7 6 3.0381 2.4479 1.3482 8 7 1.9671 1.8001 1.7551 9 14 3.9688 3.5516 2.5337 10 1 5.1280 4.1624 1.8349 11 1 3.0659 4.6237 3.0241 12 1 4.4518 2.7465 3.6841 13 6 3.2550 1.2108 -2.1454 14 6 4.6503 0.7265 -2.5450 15 1 5.4065 1.3372 -2.0518 16 6 4.8163 0.8253 -4.0678 17 6 6.2402 0.3828 -4.4225 18 6 6.5622 -0.8957 -3.6979 19 6 5.8741 -1.3113 -2.6676 20 8 4.8129 -0.6428 -2.1646 21 1 -1.0502 -0.0002 0.0004 22 1 3.0097 -0.8870 -0.5175 23 1 3.0093 -0.0035 1.0277 24 1 1.6607 1.8963 2.6705 25 1 2.5036 0.5500 -2.5774 26 1 3.1028 2.2249 -2.5152 27 1 4.0947 0.1729 -4.5596 28 1 4.6605 1.8553 -4.3888 29 1 6.9464 1.1576 -4.1240 30 1 6.3128 0.2194 -5.4978 31 1 7.3939 -1.4926 -4.0421 32 1 6.1688 -2.2360 -2.1937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335119212.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:14 Heat of formation + Delta-G solvation = 54.574965 kcal Electronic energy + Delta-G solvation = -15115.409154 eV Core-core repulsion = 12658.140931 eV Total energy + Delta-G solvation = -2457.268223 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60796 -35.95637 -33.55165 -32.29502 -31.48960 -30.19056 -26.98278 -25.83444 -23.90535 -22.71526 -20.83189 -18.47984 -17.35069 -16.62235 -16.19096 -15.38705 -15.01873 -14.35906 -13.83305 -13.53128 -13.31755 -13.03298 -12.61802 -12.38023 -11.98574 -11.41767 -11.33142 -10.93248 -10.70692 -10.63811 -10.29495 -10.16261 -10.05981 -9.91864 -8.87237 -8.68931 -8.36054 -8.02402 -6.94975 -5.76293 -3.16607 2.62125 3.38125 3.46774 3.48403 3.96772 4.21912 4.46815 4.57071 5.05091 5.08677 5.24137 5.38087 5.53914 5.71001 5.80265 5.85601 5.92908 6.00878 6.06791 6.15341 6.27023 6.42183 6.67002 6.75168 6.84417 6.94797 7.33727 7.50488 7.77284 8.11741 8.31360 9.13997 9.26376 9.80855 10.28393 11.27227 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027842 B = 0.009247 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.433854 B = 3027.285815 C = 3589.485577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.093 4.093 3 C 0.269 3.731 4 N -0.581 5.581 5 C -0.268 4.268 6 H 0.074 0.926 7 C 0.005 3.995 8 N -0.884 5.884 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.292 1.292 12 H -0.289 1.289 13 C 0.156 3.844 14 C 0.070 3.930 15 H 0.071 0.929 16 C -0.155 4.155 17 C -0.075 4.075 18 C -0.307 4.307 19 C 0.067 3.933 20 O -0.306 6.306 21 H 0.189 0.811 22 H 0.048 0.952 23 H 0.091 0.909 24 H 0.253 0.747 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.861 -4.204 -9.042 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.096 4.096 3 C 0.144 3.856 4 N -0.300 5.300 5 C -0.397 4.397 6 H 0.091 0.909 7 C -0.194 4.194 8 N -0.527 5.527 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.219 1.219 12 H -0.215 1.215 13 C 0.028 3.972 14 C 0.012 3.988 15 H 0.089 0.911 16 C -0.193 4.193 17 C -0.112 4.112 18 C -0.327 4.327 19 C 0.003 3.997 20 O -0.219 6.219 21 H 0.207 0.793 22 H 0.066 0.934 23 H 0.109 0.891 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.645 -4.231 -8.721 11.217 hybrid contribution 0.400 0.788 0.584 1.059 sum 6.045 -3.443 -8.137 10.706 Atomic orbital electron populations 1.24175 0.95333 1.06270 1.06823 1.24429 0.95431 0.94899 0.94837 1.17790 0.82394 0.87201 0.98260 1.43957 1.74624 1.11773 0.99628 1.19201 1.26111 0.99574 0.94770 0.90869 1.24884 0.96346 0.99299 0.98920 1.70173 1.20415 1.45298 1.16821 0.86327 0.79692 0.79859 0.81524 1.20345 1.21927 1.21530 1.20835 0.91248 0.98963 0.86190 1.23663 1.02461 0.80247 0.92456 0.91146 1.22258 0.97246 1.02281 0.97545 1.20258 0.96349 0.95370 0.99269 1.22347 1.05971 1.02625 1.01721 1.22057 0.88007 0.96270 0.93351 1.86045 1.42638 1.25412 1.67807 0.79328 0.93408 0.89135 0.93611 0.93479 0.91307 0.91179 0.90617 0.91846 0.91602 0.87148 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.24 19.25 29.55 0.57 -6.68 16 2 C -0.09 -2.35 11.58 -37.13 -0.43 -2.78 16 3 C 0.27 6.62 5.27 -6.83 -0.04 6.59 16 4 N -0.58 -14.35 2.46 -176.58 -0.43 -14.78 16 5 C -0.27 -7.19 9.64 -15.06 -0.15 -7.33 16 6 H 0.07 1.92 7.93 -52.49 -0.42 1.50 16 7 C 0.00 0.14 4.82 -17.43 -0.08 0.05 16 8 N -0.88 -25.44 9.59 55.49 0.53 -24.90 16 9 Si 0.90 21.57 29.61 -169.99 -5.03 16.53 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.16 3.17 5.39 -4.05 -0.02 3.15 16 14 C 0.07 1.26 3.10 -26.47 -0.08 1.18 16 15 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 16 C -0.15 -2.22 5.55 -26.33 -0.15 -2.37 16 17 C -0.08 -0.99 6.23 -27.87 -0.17 -1.16 16 18 C -0.31 -4.19 9.97 -36.06 -0.36 -4.55 16 19 C 0.07 1.01 10.88 29.10 0.32 1.33 16 20 O -0.31 -5.61 8.82 -17.11 -0.15 -5.76 16 21 H 0.19 3.73 7.80 -54.08 -0.42 3.31 16 22 H 0.05 1.08 7.05 -51.93 -0.37 0.72 16 23 H 0.09 2.43 6.48 -51.93 -0.34 2.09 16 24 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 26 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 273.97 15.07 4.13 4.13 Total: -1.00 -29.90 273.97 -6.02 -35.92 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.47 Total: 1.44 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -0.59 Total: -12.57 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.10 Total: -39.68 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.15 Total: -5.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.90 -6.02 -35.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335119212.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.496 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds