Wall clock time and date at job start Sun Mar 29 2020 21:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47387 * 150.24205 * 3 2 1 5 5 C 1.36936 * 120.00127 * 95.89044 * 4 3 2 6 6 H 1.07998 * 119.99700 * 162.37928 * 5 4 3 7 7 C 1.38812 * 119.99787 * 342.64997 * 5 4 3 8 8 N 1.31614 * 120.00199 * 336.80281 * 7 5 4 9 9 Si 1.86808 * 119.99596 * 156.79706 * 7 5 4 10 10 H 1.48501 * 109.47020 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46694 * 120.00277 * 9 7 5 12 12 H 1.48491 * 109.46937 * 239.99925 * 9 7 5 13 13 C 1.46496 * 119.99783 * 275.89846 * 4 3 2 14 14 C 1.52997 * 109.47314 * 269.99503 * 13 4 3 15 15 H 1.09001 * 109.70466 * 304.42211 * 14 13 4 16 16 C 1.53501 * 109.71361 * 183.79405 * 14 13 4 17 17 C 1.53270 * 108.14999 * 177.89804 * 16 14 13 18 18 C 1.50442 * 109.43522 * 46.83318 * 17 16 14 19 19 C 1.30678 * 122.50155 * 342.52321 * 18 17 16 20 20 O 1.35137 * 123.34186 * 0.41003 * 19 18 17 21 21 H 4.40648 * 5.51403 * 180.02562 * 4 1 2 22 22 H 1.09003 * 109.47490 * 30.23682 * 3 2 1 23 23 H 1.09002 * 109.47347 * 270.24147 * 3 2 1 24 24 H 0.97006 * 119.99744 * 180.02562 * 8 7 5 25 25 H 1.08996 * 109.47480 * 29.99538 * 13 4 3 26 26 H 1.09002 * 109.47453 * 149.99508 * 13 4 3 27 27 H 1.09005 * 109.72240 * 297.57492 * 16 14 13 28 28 H 1.09000 * 109.72618 * 58.24559 * 16 14 13 29 29 H 1.09002 * 109.47155 * 286.84876 * 17 16 14 30 30 H 1.08999 * 109.48157 * 166.82868 * 17 16 14 31 31 H 1.08002 * 118.75105 * 162.54086 * 18 17 16 32 32 H 1.08001 * 118.33256 * 180.43065 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.1999 -0.6855 5 6 3.4763 2.3108 0.0383 6 1 4.0910 3.0781 -0.4087 7 6 3.0381 2.4479 1.3482 8 7 1.9671 1.8001 1.7551 9 14 3.9688 3.5516 2.5337 10 1 5.1280 4.1624 1.8349 11 1 3.0659 4.6237 3.0241 12 1 4.4518 2.7465 3.6841 13 6 3.2550 1.2108 -2.1454 14 6 4.6503 0.7265 -2.5450 15 1 5.4065 1.3372 -2.0518 16 6 4.8163 0.8253 -4.0678 17 6 6.2402 0.3828 -4.4225 18 6 6.5622 -0.8957 -3.6979 19 6 5.8741 -1.3113 -2.6676 20 8 4.8129 -0.6428 -2.1646 21 1 -1.0502 -0.0002 0.0004 22 1 3.0097 -0.8870 -0.5175 23 1 3.0093 -0.0035 1.0277 24 1 1.6607 1.8963 2.6705 25 1 2.5036 0.5500 -2.5774 26 1 3.1028 2.2249 -2.5152 27 1 4.0947 0.1729 -4.5596 28 1 4.6605 1.8553 -4.3888 29 1 6.9464 1.1576 -4.1240 30 1 6.3128 0.2194 -5.4978 31 1 7.3939 -1.4926 -4.0421 32 1 6.1688 -2.2360 -2.1937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335119212.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:14 Heat of formation + Delta-G solvation = 37.986351 kcal Electronic energy + Delta-G solvation = -15116.128490 eV Core-core repulsion = 12658.140931 eV Total energy + Delta-G solvation = -2457.987559 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88235 -37.79918 -34.73483 -33.91059 -33.43993 -31.82396 -28.51947 -27.77900 -25.32951 -24.08824 -22.55390 -19.78289 -19.21177 -18.25387 -17.59042 -17.05690 -16.52538 -15.88200 -15.42254 -15.29631 -14.75542 -14.70566 -13.81201 -13.68967 -13.41589 -13.28927 -13.16506 -12.77198 -12.43206 -12.21254 -11.94284 -11.77188 -11.57394 -11.28195 -10.78628 -10.65091 -10.31477 -9.18320 -8.91236 -7.82750 -5.23898 1.46112 1.49675 1.51353 1.58817 2.32038 2.53271 2.59365 2.73372 3.27895 3.69509 3.93843 4.06701 4.15116 4.18264 4.36835 4.49878 4.62976 4.75793 4.85116 4.88858 5.03906 5.05349 5.07336 5.30309 5.35193 5.50541 5.64183 5.68801 5.79263 6.28945 6.89760 7.10399 7.35669 7.83312 8.28499 9.19132 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027842 B = 0.009247 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.433854 B = 3027.285815 C = 3589.485577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.135 4.135 3 C 0.277 3.723 4 N -0.596 5.596 5 C -0.271 4.271 6 H 0.076 0.924 7 C -0.046 4.046 8 N -0.912 5.912 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.297 1.297 12 H -0.293 1.293 13 C 0.155 3.845 14 C 0.078 3.922 15 H 0.051 0.949 16 C -0.148 4.148 17 C -0.079 4.079 18 C -0.292 4.292 19 C 0.036 3.964 20 O -0.334 6.334 21 H 0.224 0.776 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.246 0.754 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 -4.168 -10.496 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.138 4.138 3 C 0.152 3.848 4 N -0.315 5.315 5 C -0.400 4.400 6 H 0.094 0.906 7 C -0.243 4.243 8 N -0.557 5.557 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.224 1.224 12 H -0.220 1.220 13 C 0.028 3.972 14 C 0.020 3.980 15 H 0.069 0.931 16 C -0.186 4.186 17 C -0.116 4.116 18 C -0.312 4.312 19 C -0.027 4.027 20 O -0.248 6.248 21 H 0.241 0.759 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.153 0.847 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.575 -4.199 -10.217 12.856 hybrid contribution 0.133 0.733 0.937 1.197 sum 6.708 -3.466 -9.281 11.964 Atomic orbital electron populations 1.25026 0.96357 1.04766 1.05154 1.24788 0.96267 0.96366 0.96378 1.17587 0.82568 0.87854 0.96824 1.44124 1.74915 1.11168 1.01308 1.19490 1.25325 0.99935 0.95253 0.90634 1.25565 0.97164 1.01224 1.00328 1.70322 1.21769 1.47155 1.16439 0.85354 0.78592 0.77987 0.79335 1.19233 1.22410 1.21984 1.20967 0.92967 0.99380 0.83845 1.23277 0.99664 0.80307 0.94756 0.93108 1.22215 0.98439 1.03420 0.94546 1.20369 0.95312 0.95208 1.00750 1.22707 1.05532 1.02544 1.00408 1.22484 0.88235 0.97302 0.94697 1.85986 1.44428 1.25381 1.69002 0.75941 0.92084 0.92088 0.94416 0.93515 0.90965 0.90954 0.89141 0.91337 0.89089 0.84712 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.66 19.25 74.32 1.43 -12.23 16 2 C -0.14 -6.88 11.58 31.12 0.36 -6.52 16 3 C 0.28 13.97 5.27 84.57 0.45 14.41 16 4 N -0.60 -29.75 2.46 -712.57 -1.75 -31.50 16 5 C -0.27 -14.63 9.64 84.03 0.81 -13.82 16 6 H 0.08 3.95 7.93 -2.91 -0.02 3.93 16 7 C -0.05 -2.57 4.82 84.86 0.41 -2.16 16 8 N -0.91 -53.41 9.59 21.65 0.21 -53.20 16 9 Si 0.96 44.94 29.61 68.60 2.03 46.97 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 13 C 0.15 6.29 5.39 86.38 0.47 6.76 16 14 C 0.08 2.75 3.10 30.76 0.10 2.84 16 15 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 16 C -0.15 -3.92 5.55 30.85 0.17 -3.75 16 17 C -0.08 -1.83 6.23 29.86 0.19 -1.65 16 18 C -0.29 -7.15 9.97 25.90 0.26 -6.89 16 19 C 0.04 1.01 10.88 68.11 0.74 1.75 16 20 O -0.33 -12.10 8.82 -84.15 -0.74 -12.84 16 21 H 0.22 8.32 7.80 -4.41 -0.03 8.28 16 22 H 0.06 2.83 7.05 -2.39 -0.02 2.82 16 23 H 0.06 3.40 6.48 -2.39 -0.02 3.39 16 24 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 25 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 26 H 0.07 2.82 8.04 -2.39 -0.02 2.80 16 27 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.17 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -63.66 273.97 6.20 -57.46 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.08 Total: 14.37 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 5.37 Total: -21.26 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.54 Total: -84.70 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.74 Total: -12.84 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -63.66 6.20 -57.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335119212.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.448 kcal (2) G-P(sol) polarization free energy of solvation -63.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds