Wall clock time and date at job start Sun Mar 29 2020 22:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35320 * 126.12581 * 2 1 4 4 C 1.39868 * 107.91643 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.89474 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47249 * 94.99730 * 5 4 3 7 7 C 1.36942 * 119.99895 * 89.99739 * 6 5 4 8 8 H 1.08000 * 120.00112 * 215.29555 * 7 6 5 9 9 C 1.38809 * 119.99690 * 35.30118 * 7 6 5 10 10 N 1.31624 * 119.99871 * 202.15254 * 9 7 6 11 11 Si 1.86804 * 120.00508 * 22.14477 * 9 7 6 12 12 H 1.48493 * 109.47217 * 264.72610 * 11 9 7 13 13 H 1.48498 * 109.46741 * 24.72578 * 11 9 7 14 14 H 1.48501 * 109.47099 * 144.72675 * 11 9 7 15 15 C 1.46492 * 120.00293 * 269.99973 * 6 5 4 16 16 C 1.52998 * 117.50243 * 192.40152 * 15 6 5 17 17 C 1.53000 * 117.50076 * 123.74163 * 15 6 5 18 18 N 1.30832 * 108.20695 * 0.26079 * 4 3 2 19 19 N 1.34951 * 126.12653 * 180.02562 * 2 1 3 20 20 H 0.96997 * 126.03536 * 359.95947 * 19 2 1 21 21 H 1.08994 * 109.47385 * 89.99860 * 1 2 3 22 22 H 1.09004 * 109.46711 * 209.99972 * 1 2 3 23 23 H 1.08998 * 109.46738 * 329.99371 * 1 2 3 24 24 H 1.07995 * 126.04126 * 0.02562 * 3 2 1 25 25 H 1.08996 * 109.47264 * 334.99595 * 5 4 3 26 26 H 1.09002 * 109.46953 * 215.00111 * 5 4 3 27 27 H 0.97000 * 120.00271 * 180.02562 * 10 9 7 28 28 H 1.09000 * 115.55035 * 338.07180 * 15 6 5 29 29 H 1.08999 * 117.49984 * 0.02562 * 16 15 6 30 30 H 1.09002 * 117.50130 * 145.01875 * 16 15 6 31 31 H 1.09003 * 117.50203 * 214.98119 * 17 15 6 32 32 H 1.09003 * 117.49836 * 359.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6559 -0.0006 5 6 4.8543 1.5395 -0.0003 6 7 5.3207 1.7275 1.3757 7 6 6.2314 0.8583 1.9147 8 1 6.1746 0.5968 2.9610 9 6 7.2275 0.3134 1.1162 10 7 7.8152 -0.8095 1.4715 11 14 7.7340 1.1736 -0.4628 12 1 6.9942 0.5836 -1.6071 13 1 7.4169 2.6208 -0.3616 14 1 9.1936 1.0002 -0.6747 15 6 4.8130 2.8451 2.1751 16 6 5.5383 3.1646 3.4838 17 6 4.1536 2.5131 3.5152 18 7 3.6334 -0.6524 -0.0066 19 7 2.3026 -1.0900 -0.0005 20 1 2.0055 -2.0134 -0.0003 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5139 24 1 1.9741 2.1211 0.0004 25 1 4.6025 2.5073 -0.4339 26 1 5.6420 1.0710 -0.5902 27 1 8.5116 -1.1901 0.9137 28 1 4.4063 3.6823 1.6078 29 1 6.3936 2.5435 3.7498 30 1 5.6085 4.2119 3.7777 31 1 3.3132 3.1321 3.8297 32 1 4.0971 1.4630 3.8018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337018582.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:56 Heat of formation + Delta-G solvation = 103.530840 kcal Electronic energy + Delta-G solvation = -15176.158038 eV Core-core repulsion = 12753.305452 eV Total energy + Delta-G solvation = -2422.852586 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.98080 -38.87908 -35.55781 -33.93286 -32.79577 -31.67382 -27.92332 -27.70329 -25.73557 -22.95939 -21.66566 -21.34357 -21.05056 -18.35540 -18.11543 -17.26751 -16.92757 -15.72207 -15.43902 -14.93362 -14.62255 -14.46869 -14.23557 -13.94831 -13.57677 -13.37613 -12.97069 -12.69779 -12.61279 -12.22681 -11.99224 -11.81553 -11.46841 -11.13835 -10.96349 -10.56030 -10.13875 -9.38384 -8.68024 -8.17479 -5.54393 1.10190 1.32267 1.40252 1.52128 1.93512 2.16825 2.44167 3.06185 3.30141 3.43324 3.90320 3.95482 4.30721 4.33235 4.42630 4.47169 4.53830 4.69480 4.81862 4.85204 4.95960 5.01403 5.05470 5.14529 5.32938 5.39652 5.56466 5.84359 5.94238 6.17583 6.64037 6.95154 7.01509 7.64421 8.01458 9.02315 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.011700 C = 0.009280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.204248 B = 2392.497465 C = 3016.589652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.084 3.916 3 C -0.281 4.281 4 C 0.058 3.942 5 C 0.201 3.799 6 N -0.572 5.572 7 C -0.245 4.245 8 H 0.033 0.967 9 C -0.017 4.017 10 N -0.948 5.948 11 Si 0.942 3.058 12 H -0.282 1.282 13 H -0.242 1.242 14 H -0.308 1.308 15 C 0.112 3.888 16 C -0.190 4.190 17 C -0.207 4.207 18 N -0.335 5.335 19 N -0.484 5.484 20 H 0.441 0.559 21 H 0.097 0.903 22 H 0.082 0.918 23 H 0.099 0.901 24 H 0.166 0.834 25 H 0.103 0.897 26 H 0.040 0.960 27 H 0.260 0.740 28 H 0.137 0.863 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.807 7.297 -4.179 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.310 4.310 4 C -0.111 4.111 5 C 0.074 3.926 6 N -0.291 5.291 7 C -0.375 4.375 8 H 0.050 0.950 9 C -0.213 4.213 10 N -0.592 5.592 11 Si 0.771 3.229 12 H -0.211 1.211 13 H -0.166 1.166 14 H -0.237 1.237 15 C 0.005 3.995 16 C -0.229 4.229 17 C -0.247 4.247 18 N -0.159 5.159 19 N -0.194 5.194 20 H 0.285 0.715 21 H 0.115 0.885 22 H 0.101 0.899 23 H 0.118 0.882 24 H 0.183 0.817 25 H 0.121 0.879 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.154 0.846 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.942 6.168 -4.234 16.710 hybrid contribution 0.318 -0.432 -0.261 0.597 sum -14.624 5.735 -4.494 16.338 Atomic orbital electron populations 1.20556 0.83675 1.05097 1.04648 1.21816 0.96372 0.86879 0.99444 1.21387 0.90472 1.00462 1.18708 1.23517 0.97904 0.91808 0.97845 1.19840 0.89924 0.96378 0.86473 1.43677 1.45927 1.28244 1.11284 1.18319 1.05096 1.19037 0.95053 0.94964 1.25954 0.96959 0.96650 1.01728 1.70016 1.28582 1.18978 1.41608 0.85883 0.75453 0.81420 0.80178 1.21051 1.16561 1.23685 1.21476 1.00516 0.91239 0.86302 1.23141 0.95183 1.01171 1.03368 1.23235 0.96213 0.99277 1.06021 1.77491 0.97527 1.14560 1.26288 1.46476 1.03753 1.09010 1.60142 0.71453 0.88477 0.89936 0.88250 0.81683 0.87880 0.94176 0.93085 0.84612 0.91789 0.86421 0.86747 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.43 71.24 0.74 -0.51 16 2 C 0.08 2.37 7.21 41.41 0.30 2.67 16 3 C -0.28 -9.24 10.65 21.99 0.23 -9.01 16 4 C 0.06 2.50 6.80 43.10 0.29 2.79 16 5 C 0.20 8.90 5.11 85.63 0.44 9.34 16 6 N -0.57 -27.64 2.46 -682.36 -1.68 -29.32 16 7 C -0.25 -14.49 8.64 84.03 0.73 -13.76 16 8 H 0.03 2.16 7.32 -2.91 -0.02 2.14 16 9 C -0.02 -1.02 5.32 84.86 0.45 -0.57 16 10 N -0.95 -62.46 13.97 21.65 0.30 -62.16 16 11 Si 0.94 47.95 24.93 68.60 1.71 49.66 16 12 H -0.28 -14.20 6.67 99.48 0.66 -13.54 16 13 H -0.24 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 15 C 0.11 4.33 6.61 44.99 0.30 4.63 16 16 C -0.19 -7.16 9.79 30.62 0.30 -6.86 16 17 C -0.21 -7.68 10.13 30.62 0.31 -7.37 16 18 N -0.33 -15.62 12.70 -47.38 -0.60 -16.22 16 19 N -0.48 -16.46 7.36 -48.00 -0.35 -16.81 16 20 H 0.44 11.84 8.96 -213.33 -1.91 9.93 16 21 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.17 4.32 8.06 -2.91 -0.02 4.29 16 25 H 0.10 3.66 8.04 -2.39 -0.02 3.64 16 26 H 0.04 2.00 2.94 -2.39 -0.01 1.99 16 27 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 28 H 0.14 4.13 8.10 -2.39 -0.02 4.11 16 29 H 0.06 2.93 6.83 -2.39 -0.02 2.91 16 30 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -78.57 270.40 2.64 -75.93 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -0.83 Total: 17.56 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 4.09 Total: -18.65 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -2.33 Total: -124.51 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.71 Total: 49.66 kcal Total: -78.57 2.64 -75.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337018582.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.460 kcal (2) G-P(sol) polarization free energy of solvation -78.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds