Wall clock time and date at job start Sun Mar 29 2020 21:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34516 * 126.57650 * 2 1 4 4 O 1.34302 * 108.41487 * 179.71828 * 3 2 1 5 5 C 1.34301 * 109.47917 * 0.43579 * 4 3 2 6 6 C 1.50704 * 125.78957 * 179.82698 * 5 4 3 7 7 N 1.46508 * 109.46983 * 269.69512 * 6 5 4 8 8 C 1.36931 * 120.00031 * 90.00068 * 7 6 5 9 9 H 1.07997 * 120.00340 * 217.37452 * 8 7 6 10 10 C 1.38813 * 120.00236 * 37.37587 * 8 7 6 11 11 N 1.31623 * 120.00308 * 201.82637 * 10 8 7 12 12 Si 1.86804 * 119.99867 * 21.81757 * 10 8 7 13 13 H 1.48498 * 109.47637 * 264.46122 * 12 10 8 14 14 H 1.48502 * 109.46966 * 24.46576 * 12 10 8 15 15 H 1.48503 * 109.47058 * 144.46050 * 12 10 8 16 16 C 1.46496 * 119.99603 * 269.99814 * 7 6 5 17 17 C 1.53004 * 117.49605 * 194.13297 * 16 7 6 18 18 C 1.53002 * 117.49755 * 125.51169 * 16 7 6 19 19 C 1.34513 * 108.41988 * 359.56635 * 5 4 3 20 20 H 1.09004 * 109.47327 * 270.02280 * 1 2 3 21 21 H 1.09003 * 109.47195 * 30.02500 * 1 2 3 22 22 H 1.08997 * 109.47132 * 150.02046 * 1 2 3 23 23 H 1.07996 * 125.79117 * 0.02562 * 3 2 1 24 24 H 1.08994 * 109.47097 * 149.69626 * 6 5 4 25 25 H 1.08999 * 109.47191 * 29.69358 * 6 5 4 26 26 H 0.96998 * 120.00114 * 180.02562 * 11 10 8 27 27 H 1.09003 * 115.55489 * 339.84120 * 16 7 6 28 28 H 1.09000 * 117.50166 * 0.02562 * 17 16 7 29 29 H 1.08999 * 117.50066 * 145.02617 * 17 16 7 30 30 H 1.08997 * 117.50408 * 214.97981 * 18 16 7 31 31 H 1.09007 * 117.49788 * 359.97348 * 18 16 7 32 32 H 1.08002 * 126.57824 * 180.29500 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5847 0.6616 0.0063 5 6 3.6156 -0.6810 0.0007 6 6 4.8580 -1.5340 0.0012 7 7 5.2610 -1.8106 -1.3800 8 6 6.1205 -0.9622 -2.0253 9 1 5.9850 -0.7526 -3.0761 10 6 7.1661 -0.3716 -1.3291 11 7 7.7184 0.7333 -1.7837 12 14 7.7893 -1.1447 0.2531 13 1 7.1320 -0.4936 1.4147 14 1 7.4717 -2.5954 0.2537 15 1 9.2596 -0.9600 0.3487 16 6 4.7444 -2.9948 -2.0704 17 6 5.4388 -3.4154 -3.3673 18 6 4.0475 -2.7805 -3.4156 19 6 2.3495 -1.1353 0.0004 20 1 -0.3634 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3633 -0.8901 -0.5135 23 1 1.9814 2.1095 0.0004 24 1 4.6537 -2.4732 0.5151 25 1 5.6611 -1.0058 0.5151 26 1 8.4493 1.1458 -1.2973 27 1 4.3609 -3.7853 -1.4253 28 1 6.2802 -2.8113 -3.7066 29 1 5.5122 -4.4828 -3.5756 30 1 3.2058 -3.4300 -3.6556 31 1 3.9731 -1.7582 -3.7865 32 1 2.0366 -2.1690 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338234711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:45 Heat of formation + Delta-G solvation = 64.923593 kcal Electronic energy + Delta-G solvation = -15221.041042 eV Core-core repulsion = 12764.221569 eV Total energy + Delta-G solvation = -2456.819473 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.83164 -37.27931 -33.79385 -33.49803 -31.73305 -29.59091 -27.00191 -25.33513 -23.84787 -21.45440 -20.56213 -19.85814 -19.31669 -16.93690 -16.13389 -15.46943 -15.43301 -14.93096 -13.95958 -13.60674 -13.12900 -12.90307 -12.62545 -12.41903 -12.23632 -12.01206 -11.92977 -11.20520 -10.94759 -10.86540 -10.66072 -10.13074 -9.96680 -9.63659 -9.42305 -8.94935 -8.54343 -7.73827 -6.86025 -6.07073 -3.51061 2.42951 3.15506 3.26670 3.41747 3.45315 3.78000 4.44246 4.81116 4.83217 5.22204 5.32096 5.39598 5.49548 5.74112 5.81343 5.84707 5.89983 5.97622 6.00951 6.07505 6.23129 6.38611 6.41670 6.47727 6.58683 6.83743 6.89786 7.11027 7.18529 7.90410 7.95046 8.32291 8.85762 9.60372 9.95993 11.07394 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.011791 C = 0.009315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.216296 B = 2374.130063 C = 3005.307185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.190 4.190 3 C -0.063 4.063 4 O -0.160 6.160 5 C 0.016 3.984 6 C 0.202 3.798 7 N -0.559 5.559 8 C -0.275 4.275 9 H 0.082 0.918 10 C 0.044 3.956 11 N -0.889 5.889 12 Si 0.872 3.128 13 H -0.282 1.282 14 H -0.265 1.265 15 H -0.297 1.297 16 C 0.121 3.879 17 C -0.190 4.190 18 C -0.216 4.216 19 C -0.230 4.230 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.189 0.811 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.266 0.734 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 -4.399 3.850 11.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.192 4.192 3 C -0.131 4.131 4 O -0.054 6.054 5 C -0.039 4.039 6 C 0.076 3.924 7 N -0.276 5.276 8 C -0.403 4.403 9 H 0.099 0.901 10 C -0.158 4.158 11 N -0.528 5.528 12 Si 0.701 3.299 13 H -0.210 1.210 14 H -0.189 1.189 15 H -0.224 1.224 16 C 0.013 3.987 17 C -0.229 4.229 18 C -0.257 4.257 19 C -0.250 4.250 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.206 0.794 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.632 -4.068 3.869 11.148 hybrid contribution 0.112 -0.222 0.659 0.704 sum -9.520 -4.290 4.528 11.381 Atomic orbital electron populations 1.20065 0.90159 1.01867 1.01182 1.20334 0.96474 0.93183 1.09169 1.23655 0.81278 0.99131 1.09073 1.84164 1.28308 1.22848 1.70070 1.24163 0.98489 0.80598 1.00616 1.19992 0.89931 0.94390 0.88089 1.43702 1.49862 1.23247 1.10806 1.18635 1.04573 1.20580 0.96523 0.90057 1.25412 0.96349 0.96095 0.97950 1.69863 1.25761 1.16501 1.40716 0.86997 0.77703 0.81161 0.84018 1.20983 1.18900 1.22440 1.21083 1.00323 0.90250 0.87074 1.23144 0.96697 0.99231 1.03827 1.23306 0.94638 1.01396 1.06344 1.21240 0.91897 0.98974 1.12888 0.92222 0.92304 0.92076 0.79380 0.90450 0.91173 0.92455 0.88840 0.87765 0.90378 0.90642 0.89359 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.40 36.01 0.37 -0.59 16 2 C -0.19 -3.26 6.16 -104.75 -0.65 -3.91 16 3 C -0.06 -1.14 12.01 29.42 0.35 -0.79 16 4 O -0.16 -3.61 10.65 5.72 0.06 -3.55 16 5 C 0.02 0.34 6.90 -35.62 -0.25 0.09 16 6 C 0.20 4.46 5.07 -5.19 -0.03 4.43 16 7 N -0.56 -13.28 2.43 -167.02 -0.41 -13.68 16 8 C -0.27 -7.62 8.52 -15.06 -0.13 -7.75 16 9 H 0.08 2.46 7.34 -52.49 -0.39 2.08 16 10 C 0.04 1.25 5.31 -17.43 -0.09 1.16 16 11 N -0.89 -26.96 13.97 55.49 0.78 -26.18 16 12 Si 0.87 21.65 24.99 -169.99 -4.25 17.40 16 13 H -0.28 -6.85 6.68 56.52 0.38 -6.47 16 14 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 16 C 0.12 2.44 6.62 -67.93 -0.45 1.99 16 17 C -0.19 -3.65 9.81 -26.73 -0.26 -3.91 16 18 C -0.22 -4.12 10.08 -26.73 -0.27 -4.39 16 19 C -0.23 -4.29 10.77 -39.70 -0.43 -4.72 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.19 2.65 8.06 -52.49 -0.42 2.23 16 24 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 25 H 0.07 1.68 3.20 -51.93 -0.17 1.51 16 26 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 28 H 0.10 2.26 6.95 -51.93 -0.36 1.90 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.09 1.90 8.00 -51.93 -0.42 1.49 16 32 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 271.35 15.07 4.09 4.09 Total: -1.00 -30.92 271.35 -5.83 -36.75 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.28 Total: 3.55 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -1.82 Total: -18.39 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.37 Total: -39.86 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: 0.06 Total: -3.55 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.25 Total: 17.40 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.92 -5.83 -36.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338234711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.675 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds