Wall clock time and date at job start Sun Mar 29 2020 21:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34516 * 126.57650 * 2 1 4 4 O 1.34302 * 108.41487 * 179.71828 * 3 2 1 5 5 C 1.34301 * 109.47917 * 0.43579 * 4 3 2 6 6 C 1.50704 * 125.78957 * 179.82698 * 5 4 3 7 7 N 1.46508 * 109.46983 * 269.69512 * 6 5 4 8 8 C 1.36931 * 120.00031 * 90.00068 * 7 6 5 9 9 H 1.07997 * 120.00340 * 217.37452 * 8 7 6 10 10 C 1.38813 * 120.00236 * 37.37587 * 8 7 6 11 11 N 1.31623 * 120.00308 * 201.82637 * 10 8 7 12 12 Si 1.86804 * 119.99867 * 21.81757 * 10 8 7 13 13 H 1.48498 * 109.47637 * 264.46122 * 12 10 8 14 14 H 1.48502 * 109.46966 * 24.46576 * 12 10 8 15 15 H 1.48503 * 109.47058 * 144.46050 * 12 10 8 16 16 C 1.46496 * 119.99603 * 269.99814 * 7 6 5 17 17 C 1.53004 * 117.49605 * 194.13297 * 16 7 6 18 18 C 1.53002 * 117.49755 * 125.51169 * 16 7 6 19 19 C 1.34513 * 108.41988 * 359.56635 * 5 4 3 20 20 H 1.09004 * 109.47327 * 270.02280 * 1 2 3 21 21 H 1.09003 * 109.47195 * 30.02500 * 1 2 3 22 22 H 1.08997 * 109.47132 * 150.02046 * 1 2 3 23 23 H 1.07996 * 125.79117 * 0.02562 * 3 2 1 24 24 H 1.08994 * 109.47097 * 149.69626 * 6 5 4 25 25 H 1.08999 * 109.47191 * 29.69358 * 6 5 4 26 26 H 0.96998 * 120.00114 * 180.02562 * 11 10 8 27 27 H 1.09003 * 115.55489 * 339.84120 * 16 7 6 28 28 H 1.09000 * 117.50166 * 0.02562 * 17 16 7 29 29 H 1.08999 * 117.50066 * 145.02617 * 17 16 7 30 30 H 1.08997 * 117.50408 * 214.97981 * 18 16 7 31 31 H 1.09007 * 117.49788 * 359.97348 * 18 16 7 32 32 H 1.08002 * 126.57824 * 180.29500 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5847 0.6616 0.0063 5 6 3.6156 -0.6810 0.0007 6 6 4.8580 -1.5340 0.0012 7 7 5.2610 -1.8106 -1.3800 8 6 6.1205 -0.9622 -2.0253 9 1 5.9850 -0.7526 -3.0761 10 6 7.1661 -0.3716 -1.3291 11 7 7.7184 0.7333 -1.7837 12 14 7.7893 -1.1447 0.2531 13 1 7.1320 -0.4936 1.4147 14 1 7.4717 -2.5954 0.2537 15 1 9.2596 -0.9600 0.3487 16 6 4.7444 -2.9948 -2.0704 17 6 5.4388 -3.4154 -3.3673 18 6 4.0475 -2.7805 -3.4156 19 6 2.3495 -1.1353 0.0004 20 1 -0.3634 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3633 -0.8901 -0.5135 23 1 1.9814 2.1095 0.0004 24 1 4.6537 -2.4732 0.5151 25 1 5.6611 -1.0058 0.5151 26 1 8.4493 1.1458 -1.2973 27 1 4.3609 -3.7853 -1.4253 28 1 6.2802 -2.8113 -3.7066 29 1 5.5122 -4.4828 -3.5756 30 1 3.2058 -3.4300 -3.6556 31 1 3.9731 -1.7582 -3.7865 32 1 2.0366 -2.1690 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338234711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:45 Heat of formation + Delta-G solvation = 45.660051 kcal Electronic energy + Delta-G solvation = -15221.876372 eV Core-core repulsion = 12764.221569 eV Total energy + Delta-G solvation = -2457.654803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.32590 -38.97024 -35.53299 -34.85916 -33.72861 -31.20543 -28.30388 -27.05635 -25.64010 -22.99423 -22.07073 -21.60491 -20.80787 -18.71776 -17.74515 -17.29377 -17.14247 -16.55972 -15.59426 -15.24289 -14.70518 -14.28424 -14.21931 -13.86048 -13.82003 -13.56467 -13.25857 -12.77712 -12.74371 -12.48889 -12.22980 -11.96520 -11.82305 -11.41692 -11.00808 -10.64000 -10.34218 -9.20379 -8.73458 -8.24869 -5.66252 0.93670 1.28566 1.38864 1.50151 1.76993 2.36322 2.37795 2.98037 3.19222 3.37546 3.93930 4.13137 4.16784 4.26175 4.33349 4.39984 4.44808 4.59012 4.65065 4.89952 4.93094 4.96601 4.99968 5.10841 5.25152 5.28778 5.44712 5.53330 5.84141 5.88129 6.12606 6.45430 6.88828 7.53774 7.91940 8.94156 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.011791 C = 0.009315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.216296 B = 2374.130063 C = 3005.307185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.191 4.191 3 C -0.078 4.078 4 O -0.203 6.203 5 C -0.027 4.027 6 C 0.199 3.801 7 N -0.573 5.573 8 C -0.258 4.258 9 H 0.035 0.965 10 C -0.017 4.017 11 N -0.944 5.944 12 Si 0.941 3.059 13 H -0.277 1.277 14 H -0.242 1.242 15 H -0.304 1.304 16 C 0.107 3.893 17 C -0.188 4.188 18 C -0.208 4.208 19 C -0.214 4.214 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.220 0.780 24 H 0.117 0.883 25 H 0.046 0.954 26 H 0.264 0.736 27 H 0.136 0.864 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.049 0.951 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.562 -6.737 5.246 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.192 4.192 3 C -0.145 4.145 4 O -0.100 6.100 5 C -0.080 4.080 6 C 0.073 3.927 7 N -0.291 5.291 8 C -0.388 4.388 9 H 0.053 0.947 10 C -0.214 4.214 11 N -0.587 5.587 12 Si 0.768 3.232 13 H -0.204 1.204 14 H -0.165 1.165 15 H -0.232 1.232 16 C 0.001 3.999 17 C -0.227 4.227 18 C -0.248 4.248 19 C -0.234 4.234 20 H 0.097 0.903 21 H 0.092 0.908 22 H 0.090 0.910 23 H 0.236 0.764 24 H 0.135 0.865 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.154 0.846 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.152 -6.447 5.270 14.731 hybrid contribution 0.716 0.553 0.141 0.916 sum -11.436 -5.894 5.411 13.957 Atomic orbital electron populations 1.20173 0.86748 1.03200 1.02826 1.20878 0.98727 0.92081 1.07503 1.24451 0.80099 1.01209 1.08731 1.84107 1.30795 1.23797 1.71278 1.24108 0.99355 0.80558 1.03941 1.20052 0.89656 0.96091 0.86871 1.43785 1.49788 1.24058 1.11496 1.18380 1.05099 1.20429 0.94857 0.94740 1.26088 0.96861 0.96421 1.02021 1.70006 1.27077 1.18496 1.43137 0.85889 0.76215 0.81230 0.79834 1.20391 1.16520 1.23240 1.21514 1.00682 0.89997 0.87749 1.23136 0.95423 1.00815 1.03294 1.23240 0.95934 1.00094 1.05519 1.21615 0.90926 1.00627 1.10251 0.90303 0.90799 0.90991 0.76396 0.86475 0.93586 0.92708 0.84620 0.91590 0.86428 0.86828 0.93200 0.81969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.40 71.24 0.74 -0.81 16 2 C -0.19 -6.00 6.16 -19.94 -0.12 -6.12 16 3 C -0.08 -2.73 12.01 66.97 0.80 -1.92 16 4 O -0.20 -9.27 10.65 -2.46 -0.03 -9.29 16 5 C -0.03 -1.12 6.90 24.83 0.17 -0.95 16 6 C 0.20 8.46 5.07 85.63 0.43 8.89 16 7 N -0.57 -26.92 2.43 -682.33 -1.66 -28.57 16 8 C -0.26 -14.86 8.52 84.03 0.72 -14.15 16 9 H 0.03 2.26 7.34 -2.91 -0.02 2.24 16 10 C -0.02 -1.00 5.31 84.86 0.45 -0.55 16 11 N -0.94 -60.34 13.97 21.65 0.30 -60.04 16 12 Si 0.94 45.81 24.99 68.60 1.71 47.52 16 13 H -0.28 -13.06 6.68 99.48 0.66 -12.39 16 14 H -0.24 -10.75 7.11 99.48 0.71 -10.04 16 15 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 16 C 0.11 4.07 6.62 44.99 0.30 4.37 16 17 C -0.19 -6.95 9.81 30.60 0.30 -6.65 16 18 C -0.21 -7.59 10.08 30.60 0.31 -7.28 16 19 C -0.21 -7.39 10.77 22.19 0.24 -7.15 16 20 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.22 5.79 8.06 -2.91 -0.02 5.77 16 24 H 0.12 3.93 8.04 -2.39 -0.02 3.91 16 25 H 0.05 2.17 3.20 -2.39 -0.01 2.16 16 26 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 27 H 0.14 4.03 8.10 -2.39 -0.02 4.01 16 28 H 0.07 2.95 6.95 -2.39 -0.02 2.93 16 29 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 30 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.05 2.20 8.00 -2.38 -0.02 2.18 16 32 H 0.16 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -71.40 271.35 5.73 -65.67 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.06 Total: 17.04 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 4.34 Total: -32.33 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -1.35 Total: -88.61 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.03 Total: -9.29 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.71 Total: 47.52 kcal Total: -71.40 5.73 -65.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338234711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.330 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds